Is there a future for quantum chemistry onsupercomputers?. Computational ChemistryComputational chemistry is a branch of chemistry that usesprinciples of computer science to assist in so
Trang 1Is there a future for quantum chemistry on
supercomputers?
Jürg HutterPhysical-Chemistry Institute, University of Zurich
Trang 2Chemistryis the science ofatomic matter, especially itschemical reactions, but also including its properties,structure, composition, behavior, and changes as theyrelate the chemical reactions.(Wikipedia)
Chemistry is the science that invents what it studies
Trang 3Theoretical Chemistry
theoretical reasoning, usually within physics and mathematics
i h ˙ψ = H ψ Quantum Mechanics
S = k log W Statistical Mechanics
Trang 4Computational Chemistry
Computational chemistry is a branch of chemistry that usesprinciples of computer science to assist in solving chemicalproblems
Quantum Mechanics Molelcular Orbital Theory
Density Functional Theory
Ab Initio Calculations
Statistical Mechanics Molecular Dynamics
Monte CarloTransition State Theory
Trang 5Quantum Chemistry & Transition State Theory
Construct potential energy surface for a few degrees of
freedom or find a few stationary points
Trang 6Quantum Chemistry Software
• Well tested and robust programs
• User friendly and well documented
Trang 7Success of Quantum Chemistry
Quantum Chemistry Software
DFT
Development of the usage of computational quantum chemistry, as measured by two different metrics The top curve gives the number of citations to software packages per year, while the lower curves provide the number of citations of particular electronic structure methods (specifically pure and hybrid density functionals) Data are from the Web
Trang 8Quantum Chemistry on Supercomputers
Trang 9NIC Jülich (Germany) 5 %
Oak Ridge National Lab (US) 17 %CSCS (Switzerland) 16 %
Trang 10Quantum Chemistry on Supercomputers
• Most standard applications fit on mid-range computersCloud/Grid Computing
Trang 11Ab Initio Molecular Dynamics
R Car and M Parrinello, Phys Rev Lett 55 2471 (1985)
Electronic Structure Calculations
+
Molecular Dynamics
Trang 12Ab Initio Molecular Dynamics
System Size Number of Calculations
Standard QC 10-100 Atoms 10-100
AIMD 100-1000 Atoms 10’000 - 1’000’000
Supercomputers are needed
Trang 13SIESTA, Quantum-Espresso, CPMD, CP2K
Trang 14AIMD Scales on Supercomputers
History of the performance of AIMD codes on different computer
platforms (Francois Gygi, UC Davis).
Trang 15AIMD: Example Application
Dye-Sensitized Solar Cells (DSSC) Grätzel Cell
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1
Wikipedia
Trang 16• Dynamics and structure of solvent (acetonitrile) atsemiconductor (TiO2) interface
F Schiffmann et al., J Phys-Cond Mat 20 064206 (2008)
• Distribution of electrolyte (I−, I−3) at the interface
F Schiffmann et al., PNAS 107 4830 (2010)
• Regeneration mechanism of dye at interface
F Schiffmann et al., PNAS 107 4830 (2010)
• Binding and IR spectra of dye (N3) on TiO2 surface
F Schiffmann et al., J Phys Chem C 114 8398 (2010)
• Electron transfer dynamics (dye → semiconductor)
F Schiffmann, Thesis UZH 2010
Trang 17Computational Model
• Almost complete model of a DSSC
• 1751 atom computational cell, 864 (TiO2), 60 dye+electrolyte, 828 solvent
• 9346 electrons, 22951 basis functions
• MD simulation using PBE (DFT+U)
• CPU time on 1024 cores Cray-XT5
• SCF iteration: 13.7 seconds
• MD time step: 164 seconds
Trang 18DSSC: Complex Electronic Structure
Relative position of orbital levels important for chargelocalization and for electron injection dynamics
Trang 19I− Distribution at Interface
Trang 20I− Distribution at Interface
• Solvent near interface cannot be described by singledielectric constant
• Non-monotonic shell structure distribution
• First layer of ACN passivates the surface (no direct contact
of TiO2 to electrolyte)
• I−concentration peaks at 10 Å from surface (all other ionsstudied have decreasing concentrations near the interface)
Trang 21I−/I−2 Association (Free Energy)
Trang 22I−/I−2 Association
• Barrierless association of I−/I−2 with dye molecules
• I−3 from interaction of dye/I2complex with I−
• No bimolecular reaction of I−2 in solution necessaryExperiment finds only very small concentrations of I−2 insolution
Trang 23Postulated Regeneration Mechanism
Trang 24• Complex systems/interfaces can be studied with AIMD
• Most complex model of a DSSC studied had 1751 atoms
• Insight in various process of DSSC has been gained
• Ion distribution at interface
• Regeneration mechanism
• Electron transfer dynamics
Trang 25• Complex systems (condensed phase) with strong overlap
to material science and bio-sciences
• ab initio molecular dynamics for statistical sampling