mastering perl for bioinformatics ebook

... microphone generates the waveform in Figure 1-1 when it receives the sound produced by a tuning fork Notice in Figure 1-1 that the transitions from +5 volts to -5 volts are gradual for the sine wave and ... check (after the power is discon-nected, please!) for loose wires or damaged parts between those two locations Trang 9Before troubleshooting a circuit for problems, read Chapter 2 on safety You can ... think that you need to use electricity from a wall outlet for a pro-ject, make sure that you know what you’re doing first See Chapter 2 for spe-cific advice about safety Which came first, voltage

Ngày tải lên: 22/12/2013, 20:18

... ingredients for a great lab 58 Picking a perfect place to practice electronics 59 Triple threat: Heat, cold, and humidity 60 Workbench basics 61 Electronics For Dummies viii TEAM LinG - Live, Informative, ... Electronics For Dummies xii TEAM LinG - Live, Informative, Non-cost and Genuine ! Trang 14Positively or negatively sensitized 256Mirror, mirror on the PCB 257 Preparing the PCB for etching 257 ... SHALL BE LIABLE FOR DAMAGES ARISING HEREFROM THE FACT THAT AN ORGANIZATION REP-OR WEBSITE IS REFERRED TO IN THIS WREP-ORK AS A CITATION AND/REP-OR A POTENTIAL SOURCE OF THER INFORMATION DOES NOT

Ngày tải lên: 22/12/2013, 20:18

... a wealth of information from our homes, schools, and businesses, but, like any good thing, it has its problems Right It’s a great help for researching information for papers and for downloading ... deal of the success of the show depends on you You are foremost responsible for every aspect of the performance of the technical crew and for the preparedness of the stage, set, and props This ... can’t fill by using less reliable information Let's start at the top The most accurate type of information is place names, so genealogists rely most on information containing the names of cities

Ngày tải lên: 24/12/2013, 02:17

... to get some information. W: OK, what kind of information would you like? M: About the campus counseling. I think I might need some help. W: I see. Well, that’s what we are here for, to help students ... around us seem like metals or rocks. Most people forget that minerals come in many states of matter and forms. That’s why we have those five criteria for determining whether or not a substance is ... That was easy. Thanks for your help. Mastering-Books_5 2006.5.29 2:13 PM Page 727 728 Transcripts 02 Campus Life M: Donna? What are you doing? The cafeteria has closed for the afternoon. Why

Ngày tải lên: 24/12/2013, 02:17

... investigate the site. Unfortunately, these men destroyed and plundered much of the ruins and officially concluded that the civilization had been built by foreigners from the north. Fortunately, however, ... situation for a short time longer, but he recommends that she talk to her roommate about the problem. In my opinion, the woman should follow the man’s recommendation. For one thing, it is not fair for ... and catch prey for him. Yes? W: See, to me that’s not hunting. It’s like the fox hunt . you get another animal to do the hunting for you. Where’s the skill in that? M: OK, well, for one thing,

Ngày tải lên: 24/12/2013, 02:17

... just what this force, society, actually does For one, it organizes individuals into a system aimed at obtaining the things they need for survival It does this by giving us guidelines for behavior, ... with lots of deformities, such as extra legs, missing body parts, or malformed parts, we know that the area has probably been polluted, that the appropriate testing needs to be performed, and the ... in particular ways called transformations The simplest transformation is called the retrograde tone row As you might guess from the word “retrograde,” this transformation is just the prime row

Ngày tải lên: 24/12/2013, 02:17

... Argument for Shakespeare: - Little genuine SUPPORTABLE evidence for Earl of OXFORD - It is SKETCHY, poorly-RESEARCHED conspiracy theory - Plays not considered SERIOUS literature: reason for no ... Supporting Idea: The evidence supporting Oxford is sketchy and poorly researched - Supporting Idea: There is no motivation for Shakespeare’s contemporaries to hide Oxford’s identity Step 4 The reading ... no reason to help an aristocrat like Oxford hide his true identity and that, therefore, Shakespeare did write his own plays He thinks the theory about Oxford is a CONSIPIRACY theory Skill B Practice

Ngày tải lên: 24/12/2013, 02:17

... order to walk for exercise, it takes forty-five minutes to get to my classroom Therefore, I have to leave my apartment fifteen minutes earlier than normal so that I can exercise for fifteen minutes ... playing with friends School may teach the child information or even certain skills necessary for life, but I think these are generic experiences for just about everyone When a person becomes a ... past, you would have to pay for a stamp to send a message to a friend, but today, you can send messages for free using email b In the past, you would have to pay for a stamp to send a message

Ngày tải lên: 24/12/2013, 02:17

... important in my life They organize fun and enriching activities for kids in the city For example, I had a great experience and forged lasting friendships while participating in their youth basketball ... than looking at pictures or reading texts For that matter, zoos provide an entertainment venue for people of all ages Additionally, they provide a safe home for animals whose survival is threatened ... the woman did qualify for a need-based scholarship but opted for the academic one, showing that she has the same financial need as students with need-based scholarships For these two reasons,

Ngày tải lên: 24/12/2013, 02:17

... Italy for two centuries before that. Sonnets were being written in Italian as pastoral love poems. If you recall from earlier lectures, it was Petrarch who refined the form and set the standard for ... 72º Celsius for at least 15 seconds. That is the high temperature 72 degrees for a short time 15 seconds. This allows the milk to remain fresh for two or three weeks if refrigerated. For longer-lasting ... comfort to the dying. In 1979, she received the Nobel Peace Prize for her valuable work. 03 Ecology M: What exactly are the problems with the intertidal pools on the California coast? W: For

Ngày tải lên: 28/06/2014, 14:20

... Decree Enforcement (OCDE) will be scanning all computer files for compliance starting tomorrow, and for each document that’s found to be in violation, the responsible parties will be forced to forfeit ... train her in the ways of Perl V and prepare the Engine of the Parrot for Perlitus Sixtus. It works! This file has been properly identified as one that needs to be reformatted tofit on the paper, ... started for eachscript, making Perl’s automatically updated $$ variable the most appropriate backup-file extension for use within in-place editing scripts 4.8 C ONVERTING TO LOWERCASE OR UPPERCASE Perl

Ngày tải lên: 06/08/2014, 03:20

... easier with Perl For example, Perl s test for a... operators, and operator precedence • man perlop man Lingua::EN::Inflect # conditional pluralization, and more42 • # Perl' s Plain ... Old Documentation system • man perlpod # Perl' s documentation-retrieval utility • man perldoc # AWK to Perl source-code converter • man a2p • http://perldoc .perl. org/index-functions.html ... sooner... make it easy for programmers using other Unix tools to migrate to Perl, which is why Perl comes with a sed-toperl translator Guess what Perl comes with an awk-to -perl translator

Ngày tải lên: 06/08/2014, 03:20

... automatically load fields into @F, as discussed in part 1.For this reason, split is primarily used in Minimal Perl for secondary splitting Forinstance, input lines could first be split into fields ... LISTS 223Table 7.8 lists some of Perl’s most useful functions for list processing—which providereordering, joining, filtering, and transforming services, respectively, for lists Thetable also shows ... opposite direction with Perl functions, as illustrated in table 7.9 You’ll learn how Perl’s sort and grep functions work soon, but for now, all youneed to know is that the Perl examples in the table

Ngày tải lên: 06/08/2014, 03:20

... eliminates the most common need for it rea-7 To learn about the first Perl beautifier, see http://TeachMePerl.com/perl_beautifier.html. Table 8.5 String operators for concatenation and repetition ... FOR EACH LINE OF INPUT ##### 16 ( $title, $artist, $rating )=@F; # load fields into variables 17 $fcount=@F; # get field-count for line 18 if ( $fcount != $num_fields ) { # line improperly formatted ... treatment For help in spotting these syntax errors and others, try running your code through a beautifier You can learn about and download the standard Perl beautifier fromhttp://perltidy.sourceforge.net.7

Ngày tải lên: 06/08/2014, 03:20

... $index=rand @fortunes; # select random index Listing 9.4 The fcookie2 script Trang 1028 delete $fortunes[ $index ]; # mark fortune undefined29 @fortunes=grep { defined } @fortunes; # remove ... next throw caution to the wind, for-sake all control over indexing, and see what fortune has in store for those who ran-domly access arrays. 9.1.4 Telling fortunes: The fcookie script In the ... form of a command called fortune, which displayed ahumorous message like you might find in a verbose fortune cookie We’ll pay homage to that comedic technological breakthrough by seeing how Perlscripts

Ngày tải lên: 06/08/2014, 03:20

... commands; done # Form 1 Table 10.10 The select loop for Perl use Shell::POSIX::Select; select () { } # Form 0 select () { CODE; } # Form 1 select (LIST) { CODE; } # Form 2 select $var ... & description have this format in $perlpage: 8 # perlsyn Perl syntax 9 10 # Loop creates hash that maps man-page descriptions to names 11 while ( $perlpage =~ /^\s+(perl\w+)\s+(.+)$/mg ) { ... description of its subject, in this format: perlsyn Perl syntax As illustrated in the figure, the role of perlman is to let the user select a man-pagename for viewing from its short description

Ngày tải lên: 06/08/2014, 03:20

... the submitted form 20 $form.=startform(-method=>'GET', -action=>''); 41 $form.=checkbox_group(-name=>'flavor', 42 -Values=>['Chocolate', 'Vanilla', 'Other']); 43 $form.=hr() "\n"; ... section 12.3.4). 19For additional information on creating custom modules, see Writing Perl Modules for CPAN, by Sam Tregar (Apress, 2002) Trang 20The mainstay of web programming with Perl is the CGI ... cover, this is the shorthand name used inPerl circles for the book entitled Programming Perl, which serves as the printed ref-erence manual for the Perl language classic UNIX utility Sometimes

Ngày tải lên: 06/08/2014, 03:20

... conditional random fields Bioinformatics 2005, 21(2):237-242. 7. Wang L, Sauer UH: OnD-CRF: predicting order and disorder in proteins conditional random fields Bioinformatics 2008, 24(11):1401-1402. ... fields Bioinformatics 2007, 23(5):597-604. 10. Dang TH, Van Leemput K, Verschoren A, Laukens K: Prediction of kinase-specific phosphorylation sites using conditional ran-dom fields Bioinformatics ... multiple sources of information in conditional random fields Bioinformatics 2009, 25(11):1433-1434. 12. Wang S, Quattoni A, Morency L, Demirdjian D: Hidden Condi-tional Random Fields for Gesture Recognition

Ngày tải lên: 12/08/2014, 17:20

... get with perldoc -t: % perldoc -t perl | perl- grep2.pl "\b(\S)\S \1\ b" perl5 83delta Perl changes in version 5.8.3 perl5 82delta Perl changes in version 5.8.2 perl5 81delta Perl changes ... 5.8 .1 perl5 8delta Perl changes in version 5.8.0 perl5 73delta Perl changes in version 5.7.3 perl5 72delta Perl changes in version 5.7.2 perl5 71delta Perl changes in... perl5 71delta ... http://www .perl. org/ Perl changes in version 5.6 .1 the Perl Home Page the Comprehensive Perl Archive Perl Mongers (Perl user groups) It’s a bit hard, at least for me, to see what Perl

Ngày tải lên: 12/08/2014, 21:20

... Trang 1Perl6 comes after Perl 5.Perl 6 has a space in it. I just say "Perl". This is a Perl 5 line Perl 5 is the current version. Just another Perl 5 hacker, At the end is Perl PerlPoint ... on for all of mod_perl, meaning that every program run through mod_perl, including apparentlynormal CGI programs run with ModPerl::PerlRun or ModPerl::Registry,*uses it Thismight annoy users for ... use the Perl TaintCheck directive for mod_perl 1.x: PerlTaintCheck On Taint Checking | 35 Trang 15In mod_perl 2, I include -T in the PerlSwitches directive:PerlSwitches -T I can’t use this in

Ngày tải lên: 12/08/2014, 21:20