hidden markov tree models for semantic class induction

A hidden Markov tree model for testing multiple hypotheses corresponding to Gene Ontology gene sets

A hidden Markov tree model for testing multiple hypotheses corresponding to Gene Ontology gene sets

... the GO tree contains many nodes Upward-downward Algorithm for HMTM The forward-backward algorithm is widely used in hidden Markov chain applications; its parallel in hidden Markov tree models ... structure of the GO tree We summarize the tree transformation and hidden Markov model in Liang and Nettleton [10] in the following two subsections Then we use a hidden Markov tree model to obtain ... be transformed into a tree Each of the original DAG nodes will be a union of one or more tree nodes For example, DAG node in Fig 4a is a union of tree nodes and in Fig 4d More formally, for j =

Ngày tải lên: 25/11/2020, 15:23

11 26 0
Neural sentence embedding models for semantic similarity estimation in the biomedical domain

Neural sentence embedding models for semantic similarity estimation in the biomedical domain

... network-based models for semantic similarity estimation in the biomedical domain by showing that they can keep up with and even surpass previous state-ofthe-art approaches for semantic similarity ... therefore we only report Pearson’s r Table shows results achieved by current state-of-the-art approaches that we used as baselines for comparing the results of our models For our unsupervised models, ... network-based models for semantic similarity estimation in the biomedical domain by showing that they can keep up with and even surpass previous state-of-the-art approaches for semantic similarity

Ngày tải lên: 25/11/2020, 12:14

10 8 0
parametric hidden markov models for gesture recognition

parametric hidden markov models for gesture recognition

... 1Parametric Hidden Markov Modelsfor Gesture Recognition Andrew D Wilson, Student Member, IEEE Computer Society, and Aaron F Bobick, Member, IEEE Computer Society AbstractÐA new method for the representation, ... in Gesture Recognition Hidden Markov models and related techniques have been applied to gesture recognition tasks with success Typically, trained models of each gesture class are used to compute ... matrices for the HMM and PHMM models are shown in Fig 6 The difference in performance between the HMM and PHMM is due to the fact that the HMM models the systematic variation of each class of

Ngày tải lên: 24/04/2014, 13:16

17 329 0
Báo cáo hóa học: " Research Article A Statistical Multiresolution Approach for Face Recognition Using Structural Hidden Markov Models" pptx

Báo cáo hóa học: " Research Article A Statistical Multiresolution Approach for Face Recognition Using Structural Hidden Markov Models" pptx

... Therefore, with the AT&T database, eight images were used for training and two for testing during each run When using the Essex95 database, sixteen images were used for training and four for ... been used for a signifi-cant period for law enforcement and secure access Both fin-gerprint and iris recognition systems are proven as reliable techniques; however, the method of capture for both ... which areas of an image are deemed most important [10] Hidden Markov models (HMMs) [11], which have been used successfully in speech recognition for a number of decades, are now being applied to face

Ngày tải lên: 22/06/2014, 06:20

13 385 0
Báo cáo sinh học: "Efficient algorithms for training the parameters of hidden Markov models using stochastic expectation maximization (EM) training and Viterbi training" potx

Báo cáo sinh học: "Efficient algorithms for training the parameters of hidden Markov models using stochastic expectation maximization (EM) training and Viterbi training" potx

... ancestral haplotypes using a hidden markov model Bioinformatics 2008, 24(7):972-978 Juang B, Rabiner L: A segmental k-means algorithm for estimating parameters of hidden Markov models IEEE Transactions ... EM training Background Hidden Markov models (HMMs) and their variants are widely used for analyzing biological sequence data Bioinformatics applications range from methods for comparative gene ... example models, we would thus recommend using stochastic EM training for parameter training Conclusion and discussion A wide range of bioinformatics applications are based on hidden Markov models

Ngày tải lên: 12/08/2014, 17:20

16 270 0
efficient algorithms for training the parameters of hidden markov models using stochastic expectation maximization em training and viterbi training

efficient algorithms for training the parameters of hidden markov models using stochastic expectation maximization em training and viterbi training

... algorithms for training the parameters of hidden Markov models using stochastic expectation maximization (EM) training and Viterbi training Tin Y Lam, Irmtraud M Meyer* Abstract Background: Hidden Markov ... linear-memory algorithm for EM training into the hidden Markov model compiler HMM-CONVERTER and examine their respective practical merits for three small example models Conclusions: Bioinformatics applications ... EM training Background Hidden Markov models (HMMs) and their variants are widely used for analyzing biological sequence data Bioinformatics applications range from methods for comparative gene

Ngày tải lên: 02/11/2022, 09:28

16 0 0
learning to automatically detect features for mobile robots using second order hidden markov models

learning to automatically detect features for mobile robots using second order hidden markov models

... new method based on Hidden Markov Models to interpret temporal sequences of sensor data from mobile robots to automatically detect features Hidden Markov Models have been used for a long time ... conclusions and perspectives in section 7 2 Second-order Hidden Markov Models In this section, we only present second-order Hidden Markov Models in the special case of multi dimensional continuous ... for the robot to detect pertinent features in its environment and to use them for various tasks For instance, for a mobile robot, the automatic recognition of features is an important issue for

Ngày tải lên: 04/12/2022, 15:14

14 2 0
Luận án tiến sĩ: Evidence combination in hidden Markov models for gene prediction

Luận án tiến sĩ: Evidence combination in hidden Markov models for gene prediction

... m—I1 Pr(H, X) = Shy (1 Chi ay” ơ Cha 2m" (1.1) ¡=1Hidden Markov models for sequence annotationHidden Markov models are frequently used in bioinformatics to annotate biological sequences Here, ... thesis, we use hidden Markov models both as a basis of our gene finder and to characterize the conservation patterns of similar coding regions In this section, we define hidden Markov models and ... important factor in intron recognition.Hidden Markov models and their algorithms 2 0 -004 6A hidden Markov model (HMM) is a generative probabilistic model for modeling sequence data over a given

Ngày tải lên: 02/10/2024, 02:13

154 0 0
Luận án tiến sĩ: Enhancements to hidden Markov models for gene finding and other biological applications

Luận án tiến sĩ: Enhancements to hidden Markov models for gene finding and other biological applications

... of expectation-maximization algorithms, specifically tailored for hidden Markov models.EM algorithm for learning maximum likelihood models from incomplete data sets (Dempster et al., 1977) The ... well between correct and incorrect annotations Such models (hidden Markov support vector machines (Altun et al., 2003), convex hidden Markov models (Xu et al., 2005)) are inspired by maximum margin ... a hidden Markov model for promoter and transcription start site identification Hajarnavis et al established probabilistic models for polyA signals and 3' UTR compositions Integrating such models

Ngày tải lên: 02/10/2024, 02:13

158 1 0
Báo cáo khoa học: "Tree Representations in Probabilistic Models for Extended Named Entities Detection" ppt

Báo cáo khoa học: "Tree Representations in Probabilistic Models for Extended Named Entities Detection" ppt

... entities, trees are not as complex as syntactic trees, thus, before designing an ad-hoc solution for the task, which require a remarkable effort and yet it doesn’t guarantee better perfor- mances, ... effective for feature selection at train- ing time, which is a very good point when dealing with noisy data and big set of features. 176 4 Models for Parsing Trees The models used in this work for ... fea- tures and labels for the CRF models (# features and # labels), and the number of rules for PCFG models (# rules). As we can see from the table, the number of rules is the same for the tree representations baseline,

Ngày tải lên: 24/03/2014, 03:20

11 242 0
Báo cáo khoa học: Classification of the short-chain dehydrogenase ⁄reductase superfamily using hidden Markov models potx

Báo cáo khoa học: Classification of the short-chain dehydrogenase ⁄reductase superfamily using hidden Markov models potx

... we apply hidden Markov models (HMMs) to obtain a sequence-based subdivision of the SDR superfamily that allows for automatic classification of novel sequence data and provides the basis for a nomenclature ... This cleft shows considerable Keywords bioinformatics; classification; genomes; hidden Markov model; short-chain Correspondence B Persson, IFM Bioinformatics, Linko¨ping University, S-581 83 Linko¨ping, ... difficult to obtain an overview of this superfamily We have therefore developed a family clas-sification system, based upon hidden Markov models (HMMs) To this end, we have identified 314 SDR families,

Ngày tải lên: 29/03/2014, 09:20

12 380 0
thesis-a hidden markov model based approach for face detection and recognition

thesis-a hidden markov model based approach for face detection and recognition

... Pattern YES NO Trang 34Background SegmentationBackground Model Adaptation Background Template Deformable Best Face Selection Face Tracking Eye Detection Constraints Eye Region No Yes Trang 37(x0,y0) ... Computation Centroid Reestimation Convergence Test NO YES Skeletonization Edge Detection and Model Foreground Region Parameters Ellipse Trang 41! IMTrang 47Segmentation of Region SizeFiltering Filtering

Ngày tải lên: 24/04/2014, 14:09

143 360 0
Báo cáo hóa học: " Research Article Hidden Markov Model with Duration Side Information for Novel HMMD Derivation, with Application to Eukaryotic Gene Finding" docx

Báo cáo hóa học: " Research Article Hidden Markov Model with Duration Side Information for Novel HMMD Derivation, with Application to Eukaryotic Gene Finding" docx

... to incorporate external information, “side-information”, into the HMM, as described in this paper 2 Background 2.1 Markov Chains and Standard Hidden Markov Models A Markov chain is a sequence ... “Variable duration models for speech,” in Proceedings of the Symposium on the Application of Hidden Markov models to Text and Speech, pp 143–179, 1980. [3] S Winters-Hilt, “Hidden Markov model variants ... recognition using neural networks and hidden markov models,” Pattern Recognition Letters, vol 19, no 3-4, pp 365– 371, 1998 [19] J Vlontzos and S Kung, “Hidden markov models for character recognition,”

Ngày tải lên: 21/06/2014, 08:20

11 389 0
Báo cáo sinh học: " Research Article Employing Second-Order Circular Suprasegmental Hidden Markov Models to Enhance Speaker Identification Performance in Shouted Talking Environments" potx

Báo cáo sinh học: " Research Article Employing Second-Order Circular Suprasegmental Hidden Markov Models to Enhance Speaker Identification Performance in Shouted Talking Environments" potx

... Suprasegmental Hidden Markov Models (LTRSPHMM1s), Second- Order Left-to-Right Suprasegmental Hidden Markov Models (LTRSPHMM2s), and First-Order Circular Suprasegmental Hidden Markov Models (CSPHMM1s) ... environments based on each of Second- Order Hidden Markov Models (HMM2s) [8], Second- Order Circular Hidden Markov Models (CHMM2s) [9], Suprasegmental Hidden Markov Models (SPHMMs) [10], and gender-dependent ... Supraseg- mental Hidden Markov Models (LTRSPHMM1s), Second- Order Left-to-Right Suprasegmental Hidden Markov Models (LTRSPHMM2s), and First-Order Circular Suprasegmental Hidden Markov Models (CSPHMM1s).

Ngày tải lên: 21/06/2014, 16:20

10 365 0
báo cáo hóa học:" Decision tree-based acoustic models for speech recognition" potx

báo cáo hóa học:" Decision tree-based acoustic models for speech recognition" potx

... with that for all classes 5.4 Forest models Table 3 shows the % WER of various forest DTAMs Triphone systems with 2 or 4 trees in the table used 2 or 4 DT components to make a forest for each ... results for the 5k ARPA wall-street- journal task show that context information significantly improves the performance of DT- based acoustic models as expected. Context-dependent DT-based models ... new acoustic model using decision trees (DTs) as replacements for Gaussian mixture models (GMM) to compute the observation likelihoods for a given hidden Markov model state in a speech recognition

Ngày tải lên: 21/06/2014, 20:20

32 289 0
Báo cáo hóa học: "Speech Silicon: An FPGA Architecture for Real-Time Hidden Markov-Model-Based Speech Recognition" docx

Báo cáo hóa học: "Speech Silicon: An FPGA Architecture for Real-Time Hidden Markov-Model-Based Speech Recognition" docx

... recognition for a 64 000 word task was 1.8 times slower than real time on a 1.7 GHz AMD Athalon processor [14] Additionally, the models for such a task are times larger than the models used for the ... Gupta, and J Schuster, “Speech silicon: a datadriven SoC for performing hidden Markov model based speech recognition,” in Proceedings of High Performance Embedded Computing Workshop (HPEC ’05), MIT, ... system for use with no required changes to the architecture This flexibility also allows for the use of different model complexity in any of the components, allowing for a wide range of input models

Ngày tải lên: 22/06/2014, 22:20

19 306 0
Báo cáo y học: ""Shock and kill" effects of class I-selective histone deacetylase inhibitors in combination with the glutathione synthesis inhibitor buthionine sulfoximine in cell line models for HIV-1 quiescence" doc

Báo cáo y học: ""Shock and kill" effects of class I-selective histone deacetylase inhibitors in combination with the glutathione synthesis inhibitor buthionine sulfoximine in cell line models for HIV-1 quiescence" doc

... among non-class selective and class I-selective HDACIs However, class I selectivity did not reduce the toxicity of most of the molecules for uninfected cells, which is a major concern for possible ... Jurkat cell models for HIV-1 quiescence The results of the present study may contribute to the future design of class I HDACIs for treating HIV-1 Moreover, the combined effects of class I-selective ... tool for the "kill" phase Not-withstanding the aforementioned need for amelioration, it is interesting to point out that both MS-275 and BSO have passed class I clinical trials for safety

Ngày tải lên: 12/08/2014, 23:21

10 420 0
Hidden markov models  applications to financial economics

Hidden markov models applications to financial economics

... INTRODUCTION 1 Introduction Markov Chains Passage Time Markov Chains and the Term Structure of Interest Rates State Space Methods and Kalman Filter 11 Hidden Markov Models and Hidden Markov Experts 13 ... GARCH(1,1) estimation, 34 growth rate in real GDP: Markov switching heteroskedasticity estimation, 35 hidden Markov experts, 13 hidden Markov model (HMM), 13 hidden states, 16 HMM Estimation Algorithm, ... return, 119 Markov switching heteroscedasticity model of the inflation rate, 85 Markov switching stock return model, 44 Markov switching variance model, 32 observable states, 16 HIDDEN MARKOV MODELS

Ngày tải lên: 08/01/2020, 09:52

179 40 0
A self-balanced clustering tree for semantic-based image retrieval

A self-balanced clustering tree for semantic-based image retrieval

... area for classification tasks and has great potential in image semantic learning [11, 15] Cluster tree keeps the tree simple by controlling its size and complexity, since a cumbersomely large tree ... employ decision tree induction for image semantic learning, named DT-ST, was introduced During retrieval, a set of images whose semantic concept matches the query is returned Their semantic image ... label and mapped to a semantic class to describe visual semantics for each image region Each image is extracted with many feature vectors and many semantic descriptions Trang 5For our ImageCLEF dataset,

Ngày tải lên: 26/03/2020, 02:00

19 37 0
Ứng dụng hidden markov models trong nhận dạng hành động con người dựa trên cấu trúc acclaim

Ứng dụng hidden markov models trong nhận dạng hành động con người dựa trên cấu trúc acclaim

... DỤNG MÔ HÌNH MARKOV ẨN TRONG NHẬN DẠNG HÀNH ĐỘNG CỦA CON NGƯỜI TRÊN CẤU TRÚC ACCLAIM 2.1 MÔ HÌNH MARKOV ẨN 2.1.1 Mô hình Markov (Markov Model-MM) Mô hình Markov còn gọi là mô hình Markov điển ... hình Markov ẩn - Các tài liệu về phương phápvà thuật toán nhận dạng - Tìm hiểu, nghiên cứu về HMM (Hidden Markov Models) 4.2 Phương pháp thực nghiệm - Xây dựng chương trình ứng dụng HMM (Hidden ... trúc mạng nơ ron: mạng truyền thẳng và mạng lan truyền ngược e Mô hình Markov ẩn (Hidden Markov Model-HMM) HMM là quá trình Markov với các tham số không biết trước, nhiệm vụ xác định các tham số

Ngày tải lên: 26/05/2020, 17:35

26 52 0

Bạn có muốn tìm thêm với từ khóa:

w