an ontology based pathway database coupled with data analysis tools

... technicians/physicians can view and diagnose ECG data of patients while device suppliers and researchers can access the same data for different purposes without the interoperability problem Trang 23based ... of ECG data from a specific database The developed tools cannot be directly applied to ECG data from other sources 2.3 Ontology Within the domain of Information Systems, an Ontology is “an explicit ... (HL7), a Standards Developing Organization (SDO) associated with the American National Standards Institute (ANSI), has proposed standards for electronic exchange of medical and related data in health

Ngày tải lên: 13/11/2014, 09:56

... ontology, event, and validation through alterations in metadata rather than code-based changes, allowing an agile response to evolving and changing metadata stan-dards and study goals Design and implementation ... OMeta Database Schema Metadata data tables are marked with red circles Core data tables are marked with grey circles Data tables are marked with green circles Trang 5annota-tion keyword is used, and ... the database fo uploads, review and in-formation retrieval Custom queries and reports OMeta has an interface that enables custom queries of the database All users with access to the database can

Ngày tải lên: 25/11/2020, 13:10

... Trang 1S O F T W A R E Open AccessAn integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping Qiangwei Zhou1, Jing-Quan Lim2,5, Wing-Kin Sung2,3,4*and Guoliang ... designed and implemented BatMeth2, an integrated, accurate, efficient, and user-friendly whole-genome bisulfite sequencing data analysis pipeline A Fig 6 Differential methylation analysis a Analysis ... funding body did not play any role in the study design and collection, analysis and interpretation of the data and the write-up of the manuscript. Availability of data and materials We downloaded

Ngày tải lên: 25/11/2020, 13:13

... implemented by semantic analysis of the article’s content by which TF-IDF weight and ontology weight are focused 6 An experience of ontology-based auto-tagging with blog articles 6.1 Ontology building ... The tags are ranked and suggested by their significance Trang 5Fig 4 Ontology weight ofontological tags In this paper, the ontology weight is computed with term fre-quency and without term frefre-quency ... results With ontology-based tagging, the suggested tags are ranked according to semantic analysis and this concerns not only term frequency but also similarity measured by ontol-ogy Using ontology,

Ngày tải lên: 02/11/2022, 08:54

... of H1 (lane 2) and H2 (lane 3) could be observed, and the HCR between H1 and H2 was inhibited (lane 4) However, emission bands of high-molecular-weight structures could be observed in lanes 5–10, ... 500, 250, and 100 bp; Lane 2, 1.0 μ M H1; Lane 3, 1.0 μ M H2; Lane 4, mixture of 1.0 μ M H1 and H2; Lanes 5–10, the presence of S3 (100 nM, 150 nM, 200 nM, 400 nM, 500 nM, and 600 nM) with a mixture ... selection of a new lanthanide-dependent DNAzyme for ratiometric sensing lanthanides Anal Chem 86, 9993–9999 (2014). 39 Yin, B.-C., Ye, B.-C., Tan, W., Wang, H & Xie, C.-C An allosteric dual-DNAzyme

Ngày tải lên: 19/11/2022, 11:47

... • Database: Medical Subject Headings Database4 is used as the backbone and then is integrated with Mondo Disease Ontology - Mondo5 The Comparative Toxicoge- nomics Database - CTD and Symptom Ontology ... existing databases such as the Toxicogenomics Database project (CTD) 3 can be used for the training model Applied in proposed model In ontology construction process, some databases and methods ... graph- based score is one of the standard approaches Inspired by PageRank - a website ranking algorithm by Google, LexRank and TexRank build a graph from sentences and words respectively and use

Ngày tải lên: 14/07/2023, 15:33

... • Database: Medical Subject Headings Database4 is used as the backbone and then is integrated with Mondo Disease Ontology - Mondo5 The Comparative Toxicoge- nomics Database - CTD and Symptom Ontology ... existing databases such as the Toxicogenomics Database project (CTD) 3 can be used for the training model Applied in proposed model In ontology construction process, some databases and methods ... graph- based score is one of the standard approaches Inspired by PageRank - a website ranking algorithm by Google, LexRank and TexRank build a graph from sentences and words respectively and use

Ngày tải lên: 24/07/2023, 02:36

... tools SECIMTools is an integrated suite for sophisticated statistical analysis of metabolomics data Many of the tools can be used more broadly for analysis of omics data Implementation SECIMTools ... format as SED An example of the Penalized Mahalanobis Distance tool graphic outputs are provided in the Additional file2: Figures S12 and S13 Data analysis tools The data analysis tools include ... discriminant analysis, analysis of variance,t-test, Kruskal-Wallis non-parametric test), advanced classification methods (random forest, support vector machines), and advanced variable selection tools

Ngày tải lên: 25/11/2020, 15:34

... samples CT: carried out analysis of brush biopsy samples, analyzed data PDJ: Conceived data analysis workflow, analyzed and interpreted data. BJH: carried out collection and analysis of saliva samples ... different samples being compared Trang 4Shotgun proteomics analysis: Tandem mass spectrometric analysis and sequencedatabase searching The overall workflow used for data analysis is shown in Additional ... head-and-neck pre-cancer and cancer biomarkers by differential protein expression analysis using iTRAQ-labeling and multidimensional liquid chromatography and tandem mass spectrometry Cancer

Ngày tải lên: 13/08/2014, 13:20

... se-ries data: (1) the algorithm that uses R*-tree combined with the idea of early abandon-ing in Euclidean distance computation and (2) the algorithm using MP_C associated with Skyline index; and ... Bounding Rectangle MP_C_BR Middle Points and Clipping Bounding Rectangle MK Mueen Keogh MER Mean error relative to xmean MAE Mean absolute error MLP Multi-layer perceptrons RP Random Projection ... gian gom cụm trên tập dữ liệu Heterogeneous của bốn thuật toán k-Means, k-Means, k-Means kết hợp với kd-tree và I-k-Means kết hợp với CF-tree 110 Hình 5.8 Kết quả thực nghiệm so sánh thời gian

Ngày tải lên: 26/02/2016, 20:11

... (Western Canada, n = 3; Eastern/Atlantic Canada, n = 1) and clinician (Western Canada, n = 3; Eastern/Atlantic Canada, n = 2) participants The clin-ician group included three clinclin-ician scientists/professors, ... Alberta, Canada) and IWK Health Centre (Halifax, Nova Scotia, Canada) Participant selection A purposive sample of mental health clinicians with ex-pertise in treating adolescent anxiety disorders and ... (e.g., Can you tell me more about that?) Participants were asked for suggestions or alter-natives and given the opportunity to provide any other relevant comments about the Breathe program Data analysis

Ngày tải lên: 27/02/2020, 12:21

... out in triplicates Mean and S.D (Standard Deviation) were calculated The statistical significance of the data was estimated by one-way analysis of variance and LSD test Mean comparisons were performed ... of antioxidants (vitamin C, carotenes and flavonoids), minerals (calcium, potassium and magnesium) and fibre Papaya will meet about 20% of an adult's daily folate needs, and about 75% of an adult's ... Madhu bindu) Arpit V Joshi*, Nilanjana S Baraiya, Pinal B Vyas and T.V Ramana Rao P.G Department of Biosciences, Sardar Patel University, Vallabh Vidyanagar, Anand 388120, Gujarat, India *Corresponding

Ngày tải lên: 23/09/2020, 00:36

... than stand-alone NRPS and PKS gene clusters Concerning the 34 BGCs with antimicrobial activity in vitro and positive results with RPS-BLAST but no sig-nificant homology with existing databases, ... genomic-bioinformatic-antibiogram” plat-form has significant potential to discover new candidate antibiotic producers Methods NRPPUR database construction Data collection began with a comprehensive ... Trang 1R E S E A R C H A R T I C L E Open AccessFull-length title: NRPPUR database search and in vitro analysis identify an NRPS-PKS biosynthetic gene cluster with a potential antibiotic

Ngày tải lên: 25/11/2020, 12:59

... contributions ZW and ML designed the experiments KL, LH, QK, and ZL performed data analysis KL, JX and YL wrote the main manuscript text and prepared all the figs ZW, ML, and KL discussed the results and ... loss and disrupt important biological processes, have a close rela-tionship with tumorigenesis Analysing gene expression levels can help us understand the mutation mechanism and identify cancer-related ... repeated for 100 times KEGG pathway enrichment analysis Gene set enrichment analysis was performed using the online tool the Database for Annotation, Visualization and Integrated Discovery (DAVID)

Ngày tải lên: 25/11/2020, 16:19

... regional with an average spatial and temporal resolution, the medium of spectral bands and free also Table 1 Description of LANDSAT5-TM and LANDSAT8 LANDSAT8 LANDSAT5-TM LANDSAT8 LANDSAT5-TM ... applications related to analysis and assessment of saltwater intrusion using indices group Trang 12from LANDSAT which integrated with field survey data, spatial analysis and statistical methods ... different land uses It will be standardized by reference to soil samples analysis Table 2 Mean of EC over Land Uses. Land Use Number of Samples EC Mean Salty Level 2.3 Data processing To discover

Ngày tải lên: 24/03/2022, 11:43

... Trang 1Research ArticleA Ship Collision Analysis Program Based on Upper Bound Solutions and Coupled with a Large Rotational Ship Movement Analysis Tool Herv ´e Le Sourne,1 ... individualresistances, it is possible to obtain a global evaluation of the ability of a ship to withstand animpact with another vessel Trang 3the so-called superelements, whose resistance is assessed ... Mechanical Engineering Department (LE2M), ICAM Nantes Campus, 35 Avenue du champ de Manœuvres, 44470 Carquefou, France 2 PRINCIPIA, 1 rue de la No´e, 44321 Nantes Cedex 3, France 3 Hull and Accommodation

Ngày tải lên: 01/11/2022, 08:58

... which information can be transmitted over a communication channel The data transmission rate in bits per second over a channel is limited by the available channel bandwidth (BW) and the ratio of ... throughput Additionally, the proposed MPSoC -based system can adopt variable data rates and protocols simultaneously, taking advantage of resource sharing mechanisms The proposed system architecture ... simulator and implemented/evaluated on an FPGA platform Moreover, although this work currently targets QAM -based modulation scenarios, the methodology and reconfiguration mechanisms can target QAM-based...

Ngày tải lên: 21/06/2014, 07:20

... Smeulders et al., 2002] developed ontology- based tools for annotation However, even with these ontology- based tools, the human effort required for annotation is still substantial To eliminate these efforts, ... inconsistent and imprecise due to the fact that objects within an image simultaneously carry different semantics For example, an image with tiger can be given such annotations as “tiger”, “animal”, ... Framework for Ontology- based Annotation of Paintings with Artistic Concepts 57 Introduction and Motivation 57 Overview of Framework for Ontology- based Paintings Annotation 59 Dataset...

Ngày tải lên: 14/09/2015, 13:33

... relations, instances, functions and axioms [55] Ontology 24 vocabulary requires an expressive language, such as the Web Ontology Language (OWL) [56] (a W3C’s recommendation for ontology language) Based ... disjoint, transitive, symmetric, functional and inverse property to one another With the language model and the relevant knowledge reasoning tools, software agents are able to understand the semantics ... content and to interact intelligently to one another and to the users Web resources can be defined and relations between resources, terms, and properties can be established The ontology language can...

Ngày tải lên: 28/09/2015, 13:38

... for, an injector will in practice be shut in and reopened at irregular intervals during normal operation It is generally attempted to close and reopen an injector in a controlled manner, with ... pressure), and thus, relatively small stress changes might be important Only detailed, rigorous simulations can address such questions The “pre-injection” in situ stresses are additional important data, ... injection data, a simple “p-q” plot, and rigorous coupled model (simultaneously considering injection, fracture growth, temperature, pore pressure, etc.) can provide a powerful engineering tool for management...

Ngày tải lên: 04/10/2014, 22:11