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DSpace at VNU: Multiplex PCR assay for malaria vector Anopheles minimus and four related species in the Myzomyia Series from Southeast Asia

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Multiplex PCR assay for malaria vector Anophelesminimus and four related species in the Myzomyia Series from Southeast Asia H.. For identification of specimens from Indochina Cambodia, L

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Multiplex PCR assay for malaria vector Anopheles

minimus and four related species in the Myzomyia

Series from Southeast Asia

H K P H U C , A J B A L L , L S O N*, N V H A N H*, N D T U*, N G L I E N*,

A V E R A R D I and H T O W N S O N

Liverpool School of Tropical Medicine, U.K and *Hanoi University of Science, Vietnam

Series are important malaria vectors in Africa, India and Southeast Asia Among

10 named species of Myzomyia known from the Oriental Region, seven form the

An minimusgroup Even for expert taxonomists, the adults of these species remain difficult to identify morphologically For technical staff of malaria control pro-grammes, confusion may extend to misidentification of species that are not for-mally within the minimus group For identification of specimens from Indochina (Cambodia, Laos, Vietnam), we describe a multiplex polymerase chain reaction (PCR) assay, based on rDNA internal transcribed spacer 2 (ITS2) sequences, that employs a cocktail of primers to identify An minimus Theobald sibling species A and C (sensu; Green et al., 1990) and three other species in the An minimus group (An aconitus Do¨nitz, An pampanai Bu¨ttiker & Beales, An varuna Iyengar), as well

as An jeyporiensis James, also belonging to the Myzomyia Series As the test is DNA-based, it can be applied to all life stages of these mosquitoes for ecological investigations and vector incrimination studies This PCR assay is simpler, quicker, cheaper and more readily interpreted than previous assays

An varuna, Myzomyia, malaria vectors, polymerase chain reaction assay, rDNA ITS2, sibling species, species identification, Southeast Asia, Cambodia, Laos, Vietnam

Introduction

vector throughout the Oriental region (Reid, 1968; Harrison,

1980; Lien, 1991; Pholsena, 1992; Baimai et al., 1996; Dev,

1996; Sawabe et al., 1996; Khan et al., 1998; Kobayashi

et al., 2000; Chen et al., 2002) In Thailand, Green et al

(1990) considered An minimus to comprise at least two sib-ling species, A and C, based on the absence of heterozygotes for two alleles of octanol dehydrogenase (Odh 100 and 134) The work of Sharpe et al (2000) and Somboon et al (2001) confirms that An minimus (sensu Harrison, 1980) is a com-plex of several species, with important differences in vector roles and distributions (Chen et al., 2002)

For other species in the An minimus group (Harrison, 1980; Chen et al., 2003), evidence of a role in malaria trans-mission is scanty and difficult to evaluate In addition to the

of the An minimus group among 11 Oriental species

Correspondence: Professor H Townson, Liverpool School of

Tropical Medicine, Pembroke Place, Liverpool L3 5QA, U.K.

E-mail: htownson@liverpool.ac.uk

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described in the Myzomyia*Series (sensu Edwards, 1932) of

over-lapping morphological characters lead to confusion for field

entomologists seeking to implicate the species in malaria

transmission, particularly where two or more species are

in sympatry For example, the appearance of pale spots on

the costal wing vein is used in diagnosis, yet in some parts of

southeast Asia, An minimus has highly variable wing

spot-ting that may lead to it being confused with other

Myzo-myia species (Van Bortel et al., 2000, 2001, 2002) Anopheles

but usually zoophilic Rahman et al (1995) found

cattle in Pensinsula Malaysia, whereas Hassan et al (2001)

collected it biting humans indoors in Malaysia Anopheles

(Webster, 2000) and was the primary inland vector in Java

considered a malaria vector in the hilly and forested parts

of east-central India (Rao, 1984), but its overall distribution

and importance as a malaria vector in the Oriental region is

uncertain because it has been, and continues to be, much

confused with An minimus (Reid, 1968; Van Bortel et al.,

2001) In the case of An pampanai there are few records to

indicate its true vector status

Regarding other Oriental Myzomyia, An filipinae and

and E) that may all contribute to malaria transmission in the

Indian subcontinent (Subbarao, 1998; Kar et al., 1999), of

which only species B has been recorded from southeast Asia

(Van Bortel et al., 2002) Anopheles jeyporiensis is the

com-monest anopheline in the western Ghats and has been

recorded as a vector of malaria in many parts of India,

particu-larly in the Jeypore Hills (Rao, 1984) from where it was

described, although Reid (1968) regarded it as only a minor

vector of malaria in the Orient In Vietnam, hundreds of

specimens of An jeyporiensis have been examined using a

sporozite enzyme-linked immunosorbent assay and not a

sin-gle positive has been found (Binh Nguyen Thi Huong, personal

communication) Likewise, in Assam the sporozoite rate of

0.02–0.7% in An varuna, where the major vector is An minimus

with much higher sporozoite rates (Rao, 1984; Dev, 1996)

Sharpe et al (1999) used allele-specific amplification of the D3 variable region of the 28S rDNA gene to distinguish

polymorphism (SSCP) of the D3 amplified region to dis-criminate four species, An varuna, An aconitus, An minimus

A and C Unfortunately, this method is more time consuming and the results less easy to interpret than those from conventional polymerase chain reaction (PCR) An alternative approach was adopted by Van Bortel et al (2000) who used PCR amplification of the rDNA rDNA internal transcriber spacer 2 (ITS2) region followed by BsiZI restriction enzyme digestion to distinguish An aconitus,

An jeyporiensis, An minimus A and C, An pampanai,

et al., 2002) Compared to SSCP, this is simpler, but it requires local medical entomologists to employ both PCR and restriction fragment length polymorphism (RFLP) analy-sis with consequent increased costs and methodological complexity Furthermore, RFLP fragments of very similar size are produced in An minimus C and An varuna, so that these species may easily be confused

Most recently, Kengne et al (2001) described the use of random amplified polymorphic DNA (RAPD) markers for the identification of species in the An minimus group RAPD fragments specific for species A and C were cloned and sequenced From these sequences, specific primer pairs were designed to create a multiplex PCR able to identify five species:

In this assay, the PCR products from hybrids of minimus

A and C were different from both parents These so-called

‘hybrizymes’ add to the confusion of using such a method in routine, large-scale sampling of mosquito populations

In this study, we describe the development and use of a method, based on a single multiplex PCR, for identifying

related species, An aconitus, An jeyporiensis, An varuna and

Cambodia, Laos and Vietnam (Indochina) This method has proved both simple and reliable in our hands, and when employed by others (C Walton, personal communication)

Materials and methods Mosquitoes

The specimens examined in this study were collected from

36 study sites in Vietnam, Laos and Cambodia The geo-graphical location and ecological character of the sites are shown in Fig 1 and Table 1 Female mosquitoes were also collected using landing collections on human bait A pro-portion were allowed to feed (either on the senior author or

a graduate volunteer, with informed consent) and their eggs collected and larvae reared Specimens were identified to species using morphological characters and the key of Harrison (1980) Because the molecular characteristics of these species are unambiguously different (see below), any specimens that initially were of doubtful identity, were

*

According to Harbach (1994) the Myzomyia Series includes

more than 60 recognized species of Anopheles (Cellia), mostly

endemic to the Afrotropical Region, with 11 named taxa in the

Oriental Region: aconitus Do¨nitz, filipinae Manalang, culicifacies

Giles, flavirostris (Ludlow), fluviatilis James, jeyporiensis James,

majidi (Young & Majid), mangyanus (Banks), minimus Theobald,

pampanai Bu¨ttiker & Beales and varuna Iyengar Those in bold

comprise the An minimus group Several of these nominal

species-group taxa are complexes of multiple sibling species with

non-Linnean terminology Chen et al (2002) reviewed the An minimus

group in China, where Hong Kong is the type-locality of minimus.

Molecular phylogeny of Oriental Myzomyia was interpreted by

Chen et al (2003).

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subsequently assigned readily to species on the basis of

the PCR test described below For An minimus s.l., several

offspring from each brood were then examined for their

octanol dehydrogenase electromorphs (Green et al., 1990)

to determine whether they were An minimus A or C The

remainder of the brood was preserved in absolute alcohol

for subsequent DNA studies Likewise, specimens collected

by CDC light-trap were identified morphologically and

then placed directly in absolute alcohol for assays later

Amplification and sequencing

extracted following the method of Ballinger-Crabtree et al

(1992), the final DNA pellet being re-suspended in 50 mL of

TE buffer The rDNA ITS2 region was then amplified

using conserved 5.8S and 28S primers modified from those

used by Paskewitz & Collins (1990) Each PCR reaction was

carried out in 0.5-mL microtubes in an Omni-E thermal

cycler (Hybaid: www.thermohybaid.com) using a 25 mL

DNA polymerase (Sigma: www.sigmaaldrich.com) and

20–50 ng DNA template The thermal cycle profile was as

Spin column (Qiagen: www.qiagen.com) and the products checked by running on agarose gels again before sequencing

(www.appliedbio-systems.com)

Species diagnostic PCR The assay employed six species-specific reverse primers and one universal forward primer derived from the highly conserved region of the 5.8S coding region (Tables 2 and 3) The PCR reaction was run in a 25 mL volume containing:

0.625 U Taq, and 10–20 ng DNA template This diagnostic PCR requires very little DNA and results were obtained with c 1/800 of the total DNA from a mosquito or 1/50 of the DNA extracted from a single leg The thermal cycle

5–10 min Ten microlitres of reaction products were run on 1.2% agarose gels containing ethidium bromide and pro-duced fragments whose sizes were diagnostic for the species (see Fig 2)

Results Specific ITS2 primers The complete ITS2 region was amplified from 13 speci-mens of An minimus A (373 bp) collected from Laos, Cambodia, Vietnam and on the border of Vietnam and China and from nine specimens of An minimus C (375 bp) from northern Laos, Vietnam and the border of Vietnam and China (see Table 2) There are a total of 23 bp differences between An minimus A and C, comprising two indels, 15 transversions and six transitions, and these differences were consistent throughout the sampling area In comparison, there are few similarities between the ITS2 sequences of

An aconitus, An pampanai and An varuna, whose ITS2 regions are 278, 255 and 227 bp, respectively These differ-ences confound alignment of their ITS2 sequdiffer-ences Based on species-specific differences, six primers were designed and using as reverse primers These reverse primers were mixed with 5.8S forward primer to amplify the whole ITS2 region (Manonmani et al., 2001) This diagnos-tic cocktail gives a 184 bp PCR product with template DNA from An minimus A, a 252 bp band for An varuna, a 306 bp band for An aconitus, a 346 bp band for An jeyporiensis,

a 452 bp band for An pampanai and a 509 bp band for

32 LAOS

CHINA

THAILAND

CAMBODIA

6 5

4 2

7 8

9 13 14 16 15 12 11 17 18 19

20 21 33 34

23 24 22

25

28 26 27 29

30 31 36

35

Fig 1 Map showing the mosquito collection sites in Cambodia,

Laos and Vietnam Details of sites are given in Table 1.

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PCR products that are significantly different in size to

distinguish them readily by examination of an ethidium

bromide-stained gel (Fig 2) A natural hybrid of An

as was a laboratory-produced hybrid; each gave two bands,

one from each parent

These primers were used to identify 661 adult female

mosquitoes, comprising 25 An aconitus, 65 An jeyporiensis,

280 An minimus A, 150 An minimus C, 31 An pampanai

and 110 An varuna All results were unambiguous and

agreed completely with isoenzyme or mitotic chromosome

determinations Smaller numbers of larvae and adult males

were also identified using this assay

Discussion From the area sampled, no intraspecific variation was detected in the sequence of the ITS2 region in mosquitoes

of the An minimus complex Samples of An minimus A from the extreme north of Vietnam (bordering southern China), northern Laos to central Vietnam and Laos, and southern Vietnam and north-west Cambodia have identical ITS2 sequence with An minimus A from Thailand, as described

by Sharpe et al (2000) Similarly, An minimus C from the Vietnam/China border, through middle Vietnam and Laos all have identical ITS2 sequences Studies of mitochondrial DNA sequences and of allelic variation at

Table 1 Details of sampling sites of Anopheles minimus A and C and An aconitus (Aco), An jeyporiensis (Je), An pampanai (Pa) and

An varuna (Va) Localities are those of a village or hamlet and the relevant province HBC, human bait catches; BBC, bovid bait catches; MIC, early morning indoor collections; LT, CDC light-trap collections; ORC, outdoor-resting collections; LS, larval sampling

Species Locality name/province Terrain

Date of collection

Geographical coordinates Collection method Vietnam

A, C, Je, Aco 1 Phuong Do/Ha Giang Mountain and foothills March 25, 1999 22  49 0 N 105  3 0 E BBC*, HBC*, MIC

A, Je, Aco 2 Quang Ngan Foothills March 26, 1999 22  31 0 N 104  54 0 E BBC*, HBC*, MIC

A, Je, Aco 3 Vuoc/Lao Cai Foothills February 10, 1999 22  31 0 N 104  6 0 E BBC*, HBC*, MIC

A, Je 4 Qua Foothills February 10, 1999 22  31 0 N 104  5 0 E BBC*, MIC*

A, C, Je 5 Thon/Son La Savanna October 9, 1999 21  4 0 N 104  5 0 E BBC*, MIC

A, C, Je 6 Huoi Oi High mountains October 11, 1999 20  55 0 N 104  3 0 E BBC*

A, C, Je, Aco 7 Ca Lieng/Cao Bang Mountains November 5, 1999 22  29 0 N 106  34 0 E BBC*, HBC

A, C, Je, Aco 8 Na Phuong Mountains November 4, 1999 22  31 0 N 106  33 0 E BBC*, HBC

A, C, Je, Aco 9 Ang Mo/Lang Son Mountains April 8, 2000 22  15 0 N 106  28 0 E BBC*, HBC, MIC

A, C, Je, Aco 10 Phu Cuong/Hoa Binh Mountains Three trips, 1999 20  37 0 N 105  16 0 E BBC*, HBC*, MIC*

A, C, Je, Aco 11 Quyet Chien High mountains Five trips, 1999 20  30 0 N 105  11 0 E BBC*, HBC, MIC*

A, Aco 12 Hoa Son Foothills Laboratory colony 20550N 105400E MIC*

A 13 Giang Bien/Hanoi Plain Tens of trips 21  3 0 N 105  55 0 E LS*, MIC*, ORC*

Aco, Je 16 Cat Ba/HaiPhong Island August 12, 1999 20  44 0 N 107  2 0 E BBC*

A, C, Je, Aco 17 Thach Thanh/Thanh Hoa Primitive forest November 12, 1999 20  14 0 N 105  36 0 E BBC*, HBC

A, Je, Aco 18 Quynh Thang/Nghe An Savanna and foothills November 23, 1999 19  19 0 N 105  25 0 E BBC*, HBC*

A, C, Aco 19 Cam Lam High mountains November 21, 1999 18  52 0 N 104  42 0 E BBC*, HBC*

A, C, Aco 20 Huong Khe/Ha Tinh Forest November 24, 1999 18  23 0 N 105  28 0 E BBC*

A, Aco 21 Ky Thinh Coast plain November 25, 1999 18  5 0 N 106  23 0 E BBC*

A 22 Van Canh Foothill Dry sample 13  37 0 N 108  59 0 E BBC*

A, Je, Aco 23 Konthup/Gia Lai Highland June 10, 1999 13  44 0 N 107  51 0 E BBC*, HBC, LT*

A, Je, Aco 24 Alaba Highland June 15, 1999 14  12 0 N 107  55 0 E BBC*, HBC, LT* Aco, Je 25 Khanh Phu/Khanh Hoa Mountain June 2, 1999 12  14 0 N 108  58 0 E BBC*

A, Aco, Va 26 Binh Thanh/BinhThuan Coast plain Four trips, 1999 11  10 0 N 108  41 0 E BBC*

Aco, Pa, Va 27 Tanh Linh Forest Two trips, 1999 11  5 0 N 107  40 0 E BBC*, HBC Aco, Je 28 Lada Forest and mountain May 21, 1999 11  9 0 N 107  16 0 E BBC*, HBC

A, Aco 29 Dong Xoai/Dong Nai Plain July 20, 1999 11320N 106540E BBC*

A, Je, Aco 30 Dac U/Binh Phuoc Forest Three trips, 1999 12140N 107260E BBC*, HBC*

A, Aco 31 Thanh Tan/Tay Ninh Plain and foothills May 26, 1999 11  19 0 N 106  3 0 E BBC*, HBC

Laos

A, C, Je, Aco 32 Muong Son/Samneur High mountain Dec, 1999 20  53 0 N 104  2 0 E BBC*, HBC

A, Aco, Je 33 Voong Co/Bolikhamxay Forest February 26, 1999 18  12 0 N 104  46 0 E BBC*, HBC*, MIC*

A, Aco 34 Khamcot Mountainous town February 30, 1999 18  11 0 N 104  58 0 E BBC*, MIC*

A, Je 35 Phonxay Forest March 2, 1999 18  15 0 N 104  56 0 E BBC*

Cambodia

A, Aco, Pa,Va 36 Ta Trok/Battambang Forest and plain July 3, 1999 12  51 0 N 102  49 0 E BBC*, HBC

*Methods used successfully to collect An minimus.

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microsatellite loci (Phuc and Townson, unpublished data)

show evidence of significant genetic variation within

species A and C, but this is not reflected at the level of

the ITS2 sequences The significance of this variation and

its relevance to speciation in the minimus complex can only be assessed once these other data are complete and analysed

For An aconitus, one individual was sequenced from each collection site and identical ITS2 sequences were found in all specimens from northern and southern Vietnam The same is true of An jeyporiensis Samples of An varuna and

any ITS2 sequence variation being found For the six species studied, therefore, the apparent absence of intra-specific variation within the ITS2 region sequence between samples from Cambodia, Laos and Vietnam, together with the unambiguous differences in PCR product-size, make this assay very suitable for differentiation of An aconitus,

An jeyporiensis, An pampanai and An varuna, as well as distinguishing between species A and C of An minimus in Indochina and probably elsewhere

Acknowledgements

We thank the World Health Organization TDR pro-gramme, The Leverhulme Trust and the British Council for funding this research and associated field studies

Table 3 Sequence of the primers used for ITS2 amplification and species diagnosis within Myzomyia

Oligonucleotide sequence (5 0 3 0 ) Function

Size of the PCR product (bp) PCR primers used for ITS2 amplification

PCR primers used for species diagnosis

Table 2 DNA sequence of ITS2 in Anopheles minimus species A and C showing insertions/deletions (indels –), transitions (s) and transversions (v) The two species differ at 23 out of the 375 bases found in species C

Nucleotide position

4 1 2 9 3 4 8 0 2 4 5 8 0 3 7 1 2 5 pairs Percentage

An minimus A A C A C T – – T A G G C G G C A A A A A C A A 373

An minimus C T A T T A A A G C C A G A T A G G C C C T C C 375

184 252 306 346 452 509 bp

Fig 2 Products from the multiplex PCR run on a 1.2% agarose

gel Track 1, 100 bp molecular weight ladder (Sigma P1473); track

2, Anopheles minimus A; track 3, An varuna; track 4, An aconitus;

track 5, An jeyporiensis; track 6, An pampanai; track 7, An minimus

C; track 8, laboratory A/C hybrid; track 9, natural A/C hybrid.

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