Here, we show that aminoacylation of tRNA at high pressure may be used to prepare aminoacyl-tRNA aa-tRNA using any natural or non-natural amino acid.. Results TRNAPheaminoacylation with
Trang 1at high pressure
Malgorzata Giel-Pietraszuk and Jan Barciszewski
Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland
Site-specific incorporation of non-natural amino acids
into proteins is an increasingly emerging field
because of the application of non-natural amino
acids as biophysical probes in structure–function
studies Moreover, modified peptides may be key
pharmaceuticals for the treatment of a variety of
dis-eases [1] Among these compounds are protease
inhibitors, a classic example of which are the HIV
protease inhibitors [2,3] Replacement of methionine
with selenomethionine has been used extensively for
phase determination in protein crystallography, and
the exchange of 4-fluorotryptophan for tryptophan
has been used in NMR analysis Studies on the
function and properties of proteins require mutants
containing amino acid analogues, for example
thiopr-oline, at multiple sites that do not influence protein
function, including immunogenicity, but may serve as
promising vehicles for targeted drug delivery [4]
Replacement of leucine residues with
5,5,5-trifluoro-leucine at d-positions of the 5,5,5-trifluoro-leucine GCN4-zipper peptide increases the thermal stability of the coiled-coil structure [5]
Several strategies have been used to introduce non-natural amino acids into proteins [1,6] One of the first was the derivatization of amino acids at reactive side chains, for example, conversion of Lys to Ne-acetyl lysine Chemical preparation provides a straightfor-ward method for the incorporation of non-natural amino acids using solid-phase peptide synthesis, but for technical reasons, it remains restricted to small peptides [7–9] Development of enzymatic and native chemical ligations allows us to obtain larger proteins [10] General in vitro methods of site-specific incorpor-ation of the desired amino acid into a protein are based on chemically charged suppressor tRNA, used
in a translation system [11] Over 100 non-natural amino acids have been introduced into proteins of varying size [12] The utility of mischarged tRNAs has
Keywords
high pressure; non-natural amino acids;
tRNA charging
Correspondence
Jan Barciszewski, Institute of Bioorganic
Chemistry, Polish Academy of Sciences,
Noskowskiego 12 ⁄ 14, 61-704 Poznan,
Poland
Fax: +49 61 852 05 32
Tel: +48 61 852 85 03 (ext 132)
E-mail: Jan.Barciszewski@ibch.poznan.pl
(Received 3 October 2005, revised 25 April
2006, accepted 9 May 2006)
doi:10.1111/j.1742-4658.2006.05312.x
We show a simple and reliable method of tRNA aminoacylation with natural, as well as non-natural, amino acids at high pressure Such specific and noncognate tRNAs can be used as valuable substrates for protein engineering Aminoacylation yield at high pressure depends on the chem-ical nature of the amino acid used and it is up to 10% Using CoA, which carries two potentially reactive groups -SH and -OH, as a model com-pound we showed that at high pressure amino acid is bound preferentially
to the hydroxyl group of the terminal ribose ring
Abbreviations
AARS, aminoacyl–tRNA synthetase; aa-tRNA, aminoacyl-tRNA; Cl-Phe, p-chloro-phenylalanine; Cl-Tyr, 3-chloro-tyrosine; DOPA,
3,4-dihydroxyphenylalanine; D -Orn, D -ornithine; L -Orn, L -ornithine; Orn-Ado, adenosyl-ornithine; p-Cl-Phe-Ado, adenosyl-p-chlorophenylalanine; Phe-Ado, adenosyl-phenylalanine; PPO, 2,5-diphenyloxazone.
Trang 2been expanded by developing chemical acylation of the
unprotected dinucleotide pCpA, followed by enzymatic
ligation to the 3¢-terminus of truncated tRNA using
T4 RNA ligase This approach has a low acylation
yield of 3–4% [13,14] An improved version of the
method, based on the acylation of fully protected
5¢pCpCpA resulted in 26% charging [15] Other
meth-ods of tRNA aminoacylation with non-natural amino
acids take advantage of ribozymes or appropriately
mutated aminoacyl-tRNA synthetases (AARS)
charg-ing tRNA, havcharg-ing specific codons consistcharg-ing of four or
five bases [16–20] These methods, in contrast to
enzy-matic aminoacylation, which is generally limited to
natural amino acids or their analogues, enables the
acylation of tRNAs with any non-native amino acid
[16–21] We have previously shown that yeast tRNAPhe
can be charged with phenylalanine at high pressure
without a specific AARS and the product, Phe–
tRNAPhe, was the correct substrate for protein
biosyn-thesis [22,23]
Here, we show that aminoacylation of tRNA at high
pressure may be used to prepare aminoacyl-tRNA
(aa-tRNA) using any natural or non-natural amino
acid Using CoA, we also show that amino acid binds
specifically to the ribose ring at high pressure
Applica-tion of MS provides evidence that charging occurs at
the hydroxyl group of the 3¢-end ribose
Results
TRNAPheaminoacylation with non-natural amino
acids at high pressure
Aminoacylation of tRNAPhe using natural and
non-cognate amino acids was carried out at 6 kbar as
described in Experimental procedures Charging of
tRNAPhe with 3-chloro-tyrosine (Cl-Tyr), l-ornithine
(l-Orn), d-ornithine (d-Orn),
3,4-dihydroxyphenylala-nine (DOPA) and p-chloro-phenylala3,4-dihydroxyphenylala-nine (Cl-Phe) was
analysed using PAGE (Fig 1A,B) The amounts of
amino acid incorporated into 1600 pmol of yeast
tRNAPhe, estimated on the basis of imagequant, were
40, 80, 96, 72 and 144 pmol, respectively (Table 1)
The amounts of Val–tRNAVal and Leu–tRNAVal
cal-culated from the scintillation measurement of gel
slices, obtained after fluorography (Fig 1C), were
123 and 60 pmol per 1600 pmol of Escherichia coli
tRNAVal (Table 1) The yield of the yeast tRNAPhe
charging with natural amino acids is shown in
Table 1 Time-dependent aminoacylation of tRNA
with tryptophan showed that the best result, 96 pmol
of Tyr per 1600 pmol of tRNAPhe, was obtained after
30 min of pressure at 6 kbar (Fig 2) The yield of
charging of crude tRNA from wheatgerm with lysine
at high pressure was 333 pmol Lys per 40 lg tRNA, and in the enzymatic reaction was 133 pmol (Fig 3)
4
aa-tRNA Phe tRNA Phe
aa-tRNA Phe
aa-tRNA Val tRNA Phe
A
B
C
Fig 1 Detection of aa-tRNA using acidic ⁄ urea gel electrophoresis Reactions were performed as described in the Experimental proce-dures Aminoacylation of tRNA with different amino acids carried at
6 kbar for 6 h (A) Aminoacylation of yeast tRNAPhe 1, Control [5¢- 32 P]tRNA Phe at 6 kbar for 6 h in a reaction buffer without amino acid; 2, control [5¢- 32 P]tRNA Phe incubated at normal pressure for
6 h with Cl-Tyr; 3, [5¢- 32
P]tRNAPhe with Cl-Tyr; 4, [5¢- 32
P]tRNAPhe with L -Orn, [5¢- 32 P]tRNA Phe with D -Orn, [5¢- 32 P]tRNA Phe with DOPA (B) Aminoacylation of yeast tRNA Phe 1, [5¢- 32 P]tRNA Phe not treated
at high pressure; 2, [5¢- 32
P]tRNAPhe at 6 kbar for 5 h in reaction buffer without amino acid; and 3, [5¢- 32 P]tRNA Phe with Cl-Phe; 4, [5¢- 32 P]tRNA Phe with Phe (C) Aminoacylation of E coli tRNA Val 1, Control [ 14 C]Val-tRNA Val from T thermophilus aminoacylated enzy-matically, 2, [14C]Leu-tRNAVal; 3, [14C]Val-tRNAVal acylated under high pressure Bands were visualized by fluorography.
Trang 3HPLC-MS analysis
Charging of tRNA with non-natural amino acids was
also confirmed using HPLC-MS analysis The HPLC
chromatogram of aa-tRNA, partially hydrolysed with RNaseA, showed a peak at a retention time of 9.99 min; this was identified using ESI-MS as adenosyl-phenyl-alanine (Phe-Ado) (Fig 4A) Two major signals at
m⁄ z ¼ 415 and 437 corresponded to [M + 1]+ and [M + Na]+ions, respectively The ESI-MS spectrum of tRNA aminoacylated with Chl-Phe showed signals at
m⁄ z ¼ 415 and 457, corresponding to [M + 1]+ and [M + Na]+ of Phe-Ado, respectively, and m⁄ z ¼ 450 corresponding to [M + 1]+ of adenosyl-p-chloroph-enylalanine (p-Cl-Phe-Ado) (Fig 4B) The strongest sig-nal on the ESI-MS spectrum, m⁄ z ¼ 419, recorded for aminoacylation of tRNA with ornithine, originated from adenosyl-ornithine (Orn-Ado), whereas the signals
at m⁄ z ¼ 331 and 389 derived from its decomposition products The first corresponded to fragmentation of a five-membered ring sugar by releasing 29 mass units, and the second by breaking the C–C bond between ribose and the methyl group (Fig 4C) [24,25]
Activity of high pressure-charged tRNA
in protein biosynthesis Activity of [14C]Phe–tRNAPhe aminoacylated under high pressure has been checked previously in an in vitro translation assay using poly-(U)-programmed ribo-somes [23] Here we also show that [14C]Val–tRNAVal prepared at high pressure was active in an in vitro transcription⁄ translation assay This means that high pressure-charged tRNA is a good substrate in protein synthesis (Fig 5)
Aminoacylation of CoA at high pressure The data clearly show that high pressure induces acyla-tion of the ribose OH group In order to check
Table 1 Yield of aminoacylation of tRNA with different amino acids.
Amino acid
pmole amino acid per 1600 pmole tRNA tRNAPhe
(yeast)
crude tRNA (wheatgerm)
tRNAVal (E coli) 3-Chlorotyrosine 40 (2.5%) a
Chlorophenylanine 144 (9%)a
L -Ornithine 80 (5%) a
D -Ornithine 96 (6%) a
Phenylalanine [160 (10%) a ] 116 b 247 b –
a
IMAGEQUANT measurement of [5¢- 32 P]tRNA separated on
acidic ⁄ urea PAGE b
Filter binding assay of[3H] or[14C]-amino acids.
c Scintillation counting of gel slabs containing [ 3 H] or [ 14 C]-amino
acids.
A
B
Fig 2 Aminoacylation of yeast tRNA Phe with [ 3 H]Trp at 6 kbar
pres-sure as a function of (A) tRNA concentration and (B) time.
Fig 3 High-pressure aminoacylation of tRNA crude from wheat-germ with [ 14 C] Lys at 6 kbar (r) in a control experiment,
enzymat-ic charging with crude aa-tRNA synthetase was carried out at ambient pressure (n).
Trang 4whether the hydroxyl group of ribose is preferentially acylated, we used CoA as a model CoA and trypto-phan were subjected to a pressure of 10 kbar overnight followed by TLC Bands of free substrates and amino-acyl–CoA were visualized using UV light and then stained with ninhydrin The yield of this reaction was
8% (Fig 6) Analysis of dephosphorylated CoA (CoA[OH]), aminoacylated with different amino acids carried out using TLC (Figs 7 and 8) showed the fol-lowing reaction yields: 50, 90, 32, 23 and 28% for Ala, Gly, Val, Phe and Lys, respectively Tryptophan bound to CoA[OH] and acetyl-CoA[OH] with yields of
17 and 29%, respectively The aminoacylation of CoA[OH] with tryptophan was essentially completed
in 3 h and, after that, a slow decrease in product concentration was observed (Fig 9A) The pressure dependence of CoA aminoacylation was linear (Fig 9B)
Discussion
The preparation of tRNA charged with non-natural amino acid is a critical step in the synthesis of modified protein All methods of preparing aa-tRNA charged with non-native amino acids are complicated and time-consuming [1–19] In this study, we developed a general method of tRNA aminoacylation using any amino acid
0 10 20
14 C
time [min]
Fig 5 In vitro transcription ⁄ translation assay Analysis of 14
C-labelled Val incorporation into protein was carried out by scintil-lation counting of trichloroacetic acid-insoluble material.
A
B
C
D
Fig 4 HPLC-MS analysis of an aminoacylation reaction of yeast tRNA Phe with different amino acids carried out at 6 kbar for 5 h Sig-nals at (A) m ⁄ z ¼ 415 and 437 correspond to [M + H] +
and [M + Na]+
of the Phe-Ade, respectively; (B) m ⁄ z ¼ 415 and 437 correspond to [M + H] + and [M + Na] + of the Phe-Ade, respectively, m ⁄ z ¼ 450
to [M + H] + of the p-Chl-Phe-Ade; (C) m ⁄ z ¼ 419 to [M + H] + of the Orn-Ade; (D) other signals correspond to the disintegration products Orn-Ade formula showing disintegration products [24,25].
Trang 5For that purpose, we used a high-pressure technique.
High pressure is currently used in many areas of
bio-technology Its mechanism of action includes the
deci-sive role of water structure [26,27] High pressure allows
preparation of aa-tRNA in one step, without an enzyme
or additional modification of the tRNA molecule We have previously shown that tRNAPhecould be charged with Phe at high pressure without the need for a specific aa-tRNA synthetase Aminoacylation occurred only at the 3¢-end of tRNA [22] and pressure-aminoacylated Phe–tRNAPhe was a normal substrate for peptide syn-thesis on the ribosome [23]
We tested our method using Cl-Tyr, Cl-Phe, l-Orn,
d-Orn and DOPA Aminoacyl–tRNA formation analysed on acidic PAGE showed small shift in
32P-labelled tRNA (Fig 1A,B) For comparison of the results, we used tRNAVal charged with [14C]Val and [14C]Leu, and analysed them using acidic PAGE visu-alized with fluorography (Fig 1C) The results,
estima-Fig 7 TLC of CoA[OH] aminoacylation carried out at 6 kbar for 6 h
in buffer: 0.1 M imidazole–HCl pH 6.6, 20 m M MgCl 2 , 10 m M EDTA.
The TLC plate was developed in butanol-1 ⁄ acetic acid ⁄ water (1:1:1
v ⁄ v ⁄ v) and visualized with a 0.1% ethanolic solution of ninhydrin.
Lanes are as follows: (1) CoA[OH], (2) CoA[OH] + Ala, (3) Ala,
(4) CoA[OH] + Gly, (5) Gly, (6) CoA[OH] + Phe, (7) Phe, (8)
CoA[OH] + Val, (9) Val Position of CoA[OH], in circles, was
visual-ized under UV light The arrows show the position of the products.
Fig 6 Aminoacylation of CoA[OH] with [14C]Trp at high pressure.
Graphic representation shows the distribution of radioactivity on a
TLC plate: (d) CoA + [ 14 C]Trp, (n) CoA[OH] + [ 14 C]Trp, (m)
acetyl-CoA + [14C] Trp, (r) acetyl-CoA[OH] + [14C]Trp The signal at
posi-tion 7 corresponds to Trp-CoA, at posiposi-tion 9 free Trp was detected.
The reaction was analysed by TLC on cellulose with fluorescence
indicator F254 and developed in an isobutyric acid solution, the TLC
plate was cut into pieces as shown in the left-hand panel and the
radioactivity was counted in scintillator solvent using Beckmann
Apparatus LS 5000 TA The position of the substrates was
visual-ized under UV light.
A
B
[cpm]
[cpm]
Lys
[3’OH]CoA Lys-[3’OH]CoA
Phe
0 1000 2000 3000 4000 5000 6000
0 1500 3000 4500 6000 7500 9000
[3’OH]CoA Phe-[3’OH]CoA
Fig 8 Aminoacylation of CoA[OH] with (A) [14C]Lys and (B) [ 14 C]Phe Reactions were carried out at 10 kbar pressure for 12 h Aminoacyl-CoA[OH] was separated from free amino acids using TLC cellulose F Diagrams show the distribution of radioactivity on the TLC plate measured in scintillator solvent.
Trang 6ted using the imagequant calculation, as well as by
scintillation measurements of bands corresponding to
[14C-aa]tRNAVal, were similar The yield of tRNA
charging at high pressure with non-natural amino acids
was between 2.5 and 9%, similar to data obtained for
aminoacylation with natural amino acids (Table 1)
Analysis of tRNAPhe and tRNAVal charging with a
series of natural amino acids showed that the best
yields were obtained for aromatic amino acids, but
aminoacylation using amino acids with an aliphatic
side chain was less efficient (Table 1) This can be
explained by chemical activation of the carbonyl group
by aromatic moiety This observation is consistent with
the suggestion that the aromatic ring of some amino
acids is stabilized by association with an adenine ring
A similar effect was observed for Phe-AMP ester
[28,29] Synthesis of Trp–tRNAPhe at high pressure,
measured as a function of tRNAPhe concentration,
showed the highest yield after 30 min (Fig 2A) [30]
Longer incubation decreased the amount of product
(Fig 2B) Aminoacylation of crude tRNA with Lys
at high pressure was approximately 2.5 times higher
compared with the enzymatic reaction, which was due
to misacylation (Fig 3, Table 1)
To obtain more data on tRNA charging at the 3¢-end, we performed MS analysis of a product after lim-ited hydrolysis of aa-tRNA with RNaseA MS analysis showed that the signals corresponded to Phe-Ade, p-Cl-Phe-Ade and l-Orn-Ade (Fig 4) In the spectrum for
l-Orn-Ade, in addition to the highest peak, other signals were observed One of them, at m⁄ z ¼ 331, suggests that the 2¢-OH group becomes esterified (Fig 4D) The high-pressure aminoacylation occurred preferentially at the OH group of the terminal ribose ring The 3¢-phosphate-free CoA molecule carried two potentially reactive sites, a thiol group and a 2¢- or
3¢-OH group of ribose and, owing to this, we found it to
be a very good substrate for high-pressure aminoacyla-tion (Figs 6–9) It has previously been reported that the thiol group of CoA can be acylated by AARS [31] Furthermore, it was shown that AARSs are able to utilize noncognate amino acids in the aminoacylation
of CoA, and in the acylation of mini helix of RNA [32] The equilibrium of CoA acylation was shifted towards an aa-S-CoA formation [33] In the case of high-pressure induced aminoacylation of CoA, we observed that the -OH group was acylated preferen-tially The [HS]CoA acylation yield with Trp was 8%, whereas for [HS]CoA[OH] and [acetyl-S]CoA[OH] it was 17 and 29%, respectively
The detailed mechanism for the aminoacylation reaction of tRNA at high pressure remains unknown Recently, we obtained new information about the con-formation of tRNA at elevated pressure [26] It is known that high pressure lowers the pH of water Because of this, the carbonyl group of the amino acid becomes protonated [27], which creates a positively charged carbon reactive towards nucleophilic attack by the ribose -OH group Such acylation does not occur
at normal pressure or at high pressure without imidaz-ole, which is a commonly occurring group in the active centres of many enzymes and plays an important role
in electron transfer Imidazole catalyses the aminoacyl transfer from adenylate anhydride to the 2¢OH groups along the RNA backbone [34] The nitrogen of imidaz-ole attracts a proton from the hydroxyl group, which facilitates nucleophilic attack (Fig 10) The entire pro-cess is induced by high pressure and does not proceed without it We showed that high pressure influences the conformation of tRNA because of rearrangements
in the structure of water [26] These changes most probably create a binding pocket anchoring side chain
in the amino acid, which brings the substrates closer
In summary, we have shown that the high pressure method could be used to prepare aa-tRNA in one step,
A
B
Fig 9 (A) Time-dependent aminoacylation of CoA with Trp at
10 kbar pressure (B) Pressure-dependent aminoacylation of
CoA[OH].
Trang 7without any additional substrate modification In
addi-tion, we showed that the terminal OH group is
acylat-ed preferentially
Experimental procedures
Transfer RNA
were purchased from Sigma (St Louis, MO, USA) Crude
tRNA from wheatgerm and AARS were purified by us
[35,36] Ala, Gly, Arg, Glu, His, Leu, Lys, Met, Phe, Tyr,
Cl-Phe, Cl-Tyr, l-Orn and d-Orn were purchased from
Sigma, and DOPA was from Behringwerke AG (Marburg,
Germany)
Uniformly radiolabelled amino acids
Pharmacia (Little Chalfont, UK)
Aminoacylation of tRNA at high pressure
Aminoacylation of tRNAs was carried out at 6 kbar for
and 0.1 mm of nonlabelled amino acid (or radioactively labelled amino acid mixed with nonlabelled tRNA to obtain the desired specific activity per mmol), 0.1 m imidaz-ole–HCl buffer pH 6.6, 20 mm MgCl2, and 1 mm M EDTA The solutions were pressured in 35 lL or 1 mL Teflon vessels placed in high-pressure cell (Unipress, War-saw, Poland) After pressuring, aa-tRNA was precipitated with ethanol, dried and dissolved in water
Detection of aa-tRNA using acidic/urea gels electrophoresis
aa-tRNA was purified from free tRNA on a 6.5%
8 m urea in 0.1 m sodium acetate buffer, pH 5.0 Electro-phoresis was carried out at 600 V until the Bromophenol blue reached the bottom of the gel [37]
with an intensifying screen Distribution of aa-tRNAs
elec-trophoresis the gel was treated with dimethylsulfoxide for
20 min in order to remove water, and soaked with 10% 2,5-diphenyloxazone (PPO) in dimethylsulfoxide for 2 h Excess PPO was removed with water, and the gel was dried and exposed to X-ray film in a cassette with an intensifying screen
scintilla-tion counting of individual gel slices [38,39] Charging the efficiency of crude tRNA was monitored using the filter binding method [40]
Enzymatic aminoacylation of tRNA
Five, 10, 15 and 20 lg of crude tRNA from wheatgerm were dissolved in a buffer containing 50 lL of 0.1 m
reaction mixture was spotted onto Whatmann 3 mm filter paper, washed once in 10% ice-cold trichloroacetic acid, twice in 5% trichloroacetic acid and, finally, with ethanol [41,42] The radioactivity of aa-tRNA was measured by
from M Sprinzl (Bayreuth University, Germany)
Coupled in vitro transcription/translation
The in vitro translation reaction was based on an E coli S30 lysate (strain D10) and was performed as described
previ-Fig 10 Putative mechanism of tRNA aminoacylation at high
pres-sure In the first step, high pressure induces a lowering of pH
and protonation of amino acid A proton from the 2¢- or 3¢-OH
group is transferred to imidazole and a lone oxygen pair attack
activates the carbon of the amino acid Releasing of the high
pressure causes dehydration of the intermediate product and
aa-tRNA formation.
Trang 8ously [44] Translation was carried out for 20, 40 and 80 min
CH3COOK, 30 mm NH4Cl, 14 mm MgCl2, 0.1 mm EDTA,
0.2 mm of each amino acid (Val omitted), 1 mm each of ATP
and GTP, 0.5 mm each of CTP and UTP, 30 mm
phospho-enolpyruvate, 10 mm acetyl phosphate, 4% poly(ethylene
inhibitor, 26% (v⁄ v) S30, 0.2–0.6 lm mRNA and 5 lm
polymerase, and 0.5–2 nm of a covalently closed plasmid
was determined by liquid scintillation counting of the
trichlo-roacetic acid-insoluble material as described previously [44]
HPLC/ESI/MS analysis
Ten micrograms of aa-tRNA obtained at high pressure were
purified from free amino acid on a Sephadex G-75 column
RNaseA in 0.1 m imidazole–HCl buffer pH 6.6 containing
separated by HPLC⁄ ESI ⁄ MS on Waters ⁄ Micromass ZQ
mass spectrometer (Manchester, UK) A sample was injected
eluted with a gradient of solvent A (95% water, 5%
B in (A + B) within 10 min was applied, followed by
iso-cratic elution for 20 min with 100% methanol The source
Dephosphorylation of CoA and acetyl-CoA
CoA or acetyl-CoA (4 mmol) was dephosphorylated for 1 h
ammo-nium acetate buffer, pH 5.3, in a total volume of 10 lL
Dephosphorylated CoA (CoA[OH], CoA,
acetyl-CoA[OH]) was purified on a cellulose F plate (Merck,
spots corresponding to CoA[OH] and acetyl-CoA[OH] were
visualized at UV light, scraped out and eluted with water
Aminoacylation of CoA at high pressure
Aminoacylation of CoA was carried out at 10 kbar for
16 h in a mixture containing 1 mm CoA (acetyl-CoA,
CoA[OH], acetyl-CoA[OH]), 10 mm labelled amino acid in the buffer used for the tRNA aminoacylation Trp-CoA purified on a TLC plate was dissolved in 20 lL of 0.1 m
Random deacylation was observed on TLC
TLC of aminoacyl-CoA
The aminoacyl-CoA[OH] (or aminoacyl-acetyl-CoA[OH]) was analysed by TLC on cellulose F (Merck) in solvent
visual-ized under UV, amino acid with ninhydrin staining,
samples in scintillation counter (Beckman, Fullerton, CA, USA) For that purpose, the TLC plate was cut into pieces and the amount of radioactivity was measured using scintilla-tion counting [43] Each reacscintilla-tion was repeated five times and the per cent yield of aminoacylation and standard deviation were calculated based on five independent measurements
Acknowledgements
We thank Ms Sylwia Dolecka and Ms Ewa Powalska for their assistance in laboratory work We thank also Prof Dr Volker A Erdmann and Dr Torsten Lamla from the Free University in Berlin for help in carrying out the transcription⁄ translation assay and Prof Math-ias Sprinzl from Bayreuth University for providing us with [14C]Val-tRNAVal
References
1 Hendrickson TL, Crecy-Lagard V & Schimmel P (2004) Incorporation of non-natural amino acids into proteins Annu Rev Biochem 73, 147–176
2 Abdel-Rahman HM, Al-Karamany GS, El-Koussi NA, Youssef AF & Kiso Y (2002) HIV protease inhibitors: peptidomimetic drugs and future perspectives Curr Med Chem 9, 1905–1922
3 Kiso Y, Matsumoto H, Mizumoto S, Kimura T, Fujiw-ara Y & Akaji K (1999) Small dipeptide-based HIV protease inhibitors containing the hydroxymethylcarbo-nyl isoster as an ideal transition-state mimic Biopoly-mers 51, 51–58
4 Budisa N, Minks C, Medrano FJ, Lutz J, Huber R & Moroder L (1998) Residue-specific bioincorporation of non-natural, biologically active amino acids into pro-teins as possible drug carriers: structure and stability of the per-thiaproline mutant of annexin V Proc Nat Acad
Sc USA 95, 455–459
5 Tang Y, Ghirlanda G, Vaidehi N, Kua J, Mainz DT, Goddard WA III, DeGrado WF & Tirrell DA (2001)
Trang 9Stabilization of coiled-coil peptide domains by
introduction of trifluoroleucine Biochemistry 40, 2790–
2796
6 Rothschild KJ & Gite S (1999) tRNA-mediated protein
engineering Cur Opin Biotech 10, 64–70
7 Krieg UC, Walter P & Johnson AE (1986)
Photocross-linking of the signal sequence of nascent preprolactin to
the 54-kilodalton polypeptide of the signal recognition
particle Proc Natl Acad Sci USA 83, 8604–8608
8 Krieg UC, Johnson AE & Walter P (1989) Protein
translocation across the endoplasmic reticulum
mem-brane: identification by photocross-linking of a 39-kD
integral membrane glycoprotein as part of a putative
translocation tunnel J Cell Biol 109, 2033–2043
9 Thrift RN, Andrews DW, Walter P & Johnson AE
(1991) A nascent membrane protein is located adjacent
to ER membrane proteins throughout its integration
and translation J Cell Biol 112, 809–821
10 Dawson PE, Muir TW, Clark-Lewis I & Kent SB
(1994) Synthesis of proteins by native chemical ligation
Science 266, 776–779
11 Noren CJ, Anthony-Cahill SJ, Griffith MC & Schultz
PG (1989) A general method for site-specific
incorpora-tion of unnatural amino acids into proteins Science
244, 182–188
12 Anthony-Cahill SJ, Griffith MC, Noren CJ, Suich DJ &
Schultz PG (1989) Site-specific mutagenesis with
unna-tural amino acids Trends Biochem Sci 14, 400–403
13 Heckler TG, Chang LH, Zama Y, Naka T, Chorghade
MS & Hecht SM (1984) T4 RNA ligase mediated
pre-paration of novel ’chemically misacylated’ tRNAPheS
Biochemistry 23, 1468–1473
14 Resto E, Iida A, Van Cleve MD & Hecht SM (1992)
Amplification of protein expression in a cell free system
Nucleic Acids Res 20, 5979–5983
15 Hagen MD, Scalfi-Happ C, Happ E & Chladek S
(1987) New methodology for the synthesis of
2¢(3¢)-O-aminoacyl oligoribonucleotides related to the
3¢-termi-nus of aa-tRNA Nucleic Acids Symp Series 18, 285–
288
16 Lohse PA & Szostak JW (1996) Ribozyme-catalysed
amino-acid transfer reactions Nature 381, 442–444
17 Lee N, Bessho Y, Wei K, Szostak JW & Suga H (2000)
Ribozyme-catalyzed tRNA aminoacylation Nat Struct
Biol 1, 28–33
18 Liu DR, Magliery TJ, Pastrnak M & Schultz PG (1997)
Engineering a tRNA and aminoacyl-tRNA synthase for
the site-specific incorporation of unnatural amino acids
into proteins in vivo Proc Natl Acad Sci USA 94,
10092–10097
19 Wang L & Schultz PG (2001) A general approach for
the generation of orthogonal tRNAs Chem Biol 9, 883–
890
20 Hohsaka T, Ashizuka Y & Sisido M (1999)
Incorpora-tion of two nonnatural amino acids into proteins
through extension of the genetic code Nucleic Acids Symp Series 42, 79–80
21 Hohsaka T, Ashizuka Y, Murakami H & Sisido M (2001) Five-base codons for incorporation of nonnatural amino acids into proteins Nucleic Acids Res 29, 3646– 3651
22 Krzy_zaniak A, Barciszewski JSa, an´ski P & Jurczak J (1994) The non-enzymatic specific aminoacylation of transfer RNA at high pressure Int J Biol Macromol 16, 153–158
23 Krzy_zaniak A, Salan´ski P, Twardowski T, Jurczak J & Barciszewski J (1998) tRNA aminoacylated at high pres-sure is a correct substrate for protein biosynthesis Bio-chem Mol Biol Int 45, 489–500
24 Harvey DJ (2000) Collision-induced fragmentation of underivatized N-linked carbohydrates ionized by elec-trospray J Mass Spektr 35, 1178–1190
25 Barciszewski J, Siboska G, Pedersen BO, Clark BFC & Rattan S (1996) Evidence for presence of kinetin in DNA and cell extracts FEBS Lett 393, 197–200
26 Giel-Pietraszuk M & Barciszewski J (2005) A nature of conformational changes of yeast tRNAPhe High hydrostatic pressure effects Int J Biol Macromol 37, 109–114
27 Giel-Pietraszuk M, Gdaniec Z, Brukwicki T & Barcis-zewski J (2006) Molecular mechanism of high pressure action on lupanine J Mol Struct, in press
28 Wickramasinghe NSMD, Staves MP & Lacey JC Jr (1991) Stereoselective, nonenzymatic, intramolecular transfer of amino acids Biochemistry 30, 2768–2772
29 Lacey JC Jr, Mullins DW & Watkins CL (1986) Alipha-tic amino acid side chains associate with the ‘face’ of the adenine ring J Biomol Struct Dyn 3, 783–793
30 Bonnet J & Ebel JP (1972) Interpretation of incomplete reactions in tRNA aminoacylation Aminoacylation of
Biochem 31, 335–344
31 Buerle T & Pichersky E (2002) Enzymatic synthesis and purification of aromatic coenzyme A esters Anal Chem
302, 305–312
32 Jakubowski H (1998) Aminoacylation of coenzyme A and pantetheine by aminoacyl-tRNA synthetases: poss-ible link between noncoded and coded peptide synthesis Biochemistry 37, 5147–5153
33 Jakubowski H (2000) Amino acid selectivity in the ami-noacylation of coenzyme A and RNA minihelices by aminoacyl-tRNA synthetases J Biol Chem 275, 34845– 34848
34 Weber AL & Lacey JC Jr (1975) Aminoacyl transfer from adenylate anhydride to polyribonucleotides J Mol Evol 6, 309–320
35 Barciszewska M, Joachimiak A & Barciszewski J (1989) The initiator transfer ribonucleic acids from yellow lupin seeds Correction of the nucleotide sequence and crystallisation Phytochemistry 28, 2039–2043
Trang 1036 Pulikowska J, Barciszewska M, Barciszewski J,
Joachi-miak A, Rafalski AJ & Twardowski T (1979) Effect
of elastase on elongation factor 1 from wheat germ
Biochem Biophys Res Commun 91, 1011–1017
37 Vershney U, Lee Ch, P & RajBhandary UL (1991)
Direct analysis of aminoacylation levels of tRNAs
in vitro J Biol Chem 266, 24712–24717
38 Bonner WM & Laskey RA (1974) A film detection
method for tritium-labelled proteins and nucleic acids in
polyacrylamide gels Eur J Biochem 46, 83–88
39 Laskey RA & Mills AD (1975) Quantitative film
Eur J Biochem 56, 335–341
40 Draper DE, Deckman I & Vartikar J (1988) Physical
studies of ribosomal protein – RNA interactions
Methods Enzymol 164, 203–209
41 Joachimiak A, Barciszewski J, Twardowski T, Bar-ciszewska M & Wiewio´rowski M (1978) Purification and properties of methionyl-tRNA-synthetase from yellow lupine seeds FEBS Lett 93, 51–54
42 Gamian A, Krzyzaniak A, Barciszewska MZ, Gaw-ronska I & Barciszewski J (1991) Specific incorporation
of glycine into bacterial lipopolysaccharide Novel func-tion of specific transfer ribonucleic acids Nucleic Acids Res 19, 6021–6025
43 Kinjo M, Ishigami M, Hasegawa T & Nagano K (1984) Differential coupling efficiency of chemically activated amino acid to tRNA J Mol Evol 20, 59–65
44 Lamla T, Stiege S & Erdman VA (2002) An improved protein bioreactor efficient product isolation during
Proteom 1, 466–471