Samejima, Department of Biomaterials Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113–8657, Japan Fax: +81 3 584152
Trang 1A critical parameter to evaluate enzymatic kinetics at a solid–liquid interface
Kiyohiko Igarashi, Masahisa Wada, Ritsuko Hori and Masahiro Samejima
Department of Biomaterials Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Japan
Cellulose degradation is one of the most important
processes in the carbon cycle, since cellulose is the
major component of the cell wall of plants and the
most abundant polymer in nature In addition to
the cell wall of terrestrial plants, cellulose is found in
marine algae, marine animals and bacteria, and it
gen-erally consists of a mixture of crystalline (cellulose I)
and disordered amorphous regions Cellulose I is
fur-ther classified into two polymorphs, triclinic cellulose
Ia and monoclinic cellulose Ib [1–3], whose detailed structures have been established recently through syn-chrotron X-ray and neutron fiber diffraction studies [4,5] Cellulose Iais metastable, and is irreversibly con-verted into cellulose Ib by hydrothermal treatment in alkaline solution [6]
To degrade cellulose, many organisms produce cellu-lases that hydrolyze b-1,4-glucosidic linkages of the polymer Almost all cellulases can act at amorphous
Keywords
cellobiohydrolase; cellobiose
dehydrogenase; crystalline cellulose;
glycoside hydrolase; solid–liquid interface
Correspondence
M Samejima, Department of Biomaterials
Sciences, Graduate School of Agricultural
and Life Sciences, The University of Tokyo,
1-1-1 Yayoi, Bunkyo-ku, Tokyo 113–8657,
Japan
Fax: +81 3 58415273
Tel: +81 3 58415255
E-mail: amsam@mail.ecc.u-tokyo.ac.jp
(Received 3 April 2006, revised 26 April
2006, accepted 2 May 2006)
doi:10.1111/j.1742-4658.2006.05299.x
The enzymatic kinetics of glycoside hydrolase family 7 cellobiohydrolase (Cel7A) towards highly crystalline celluloses at the solid–liquid interface was evaluated by applying the novel concept of surface density (q) of the enzyme, which is defined as the amount of adsorbed enzyme divided by the maximum amount of adsorbed enzyme When the adsorption levels of Trichoderma viride Cel7A on cellulose Iafrom Cladophora and cellulose Ib from Halocynthia were compared, the maximum adsorption of the enzyme
on cellulose Ib was 1.5 times higher than that on cellulose Ia, although the rate of cellobiose production from cellulose Ib was lower than that from cellulose Ia This indicates that the specific activity (k) of Cel7A adsorbed on cellulose Iais higher than that of Cel7A adsorbed on cellulose
Ib When k was plotted versus q, a dramatic decrease of the specific activity was observed with the increase of surface density (q-value), suggesting that overcrowding of enzyme molecules on a cellulose surface lowers their activ-ity An apparent difference of the specific activity was observed between crystalline polymorphs, i.e the specific activity for cellulose Ia was almost twice that for cellulose Ib When cellulose Iawas converted to cellulose Ib
by hydrothermal treatment, the specific activity of Cel7A decreased and became similar to that of native cellulose Ib at the same q-value These results indicate that the hydrolytic activity (rate) of bound Cel7A depends
on the nature of the crystalline cellulose polymorph, and an analysis that takes surface density into account is an effective means to evaluate cellulase kinetics at a solid–liquid interface
Abbreviations
BMCC, bacterial microcrystalline cellulose; CBD, cellulose-binding domain; CD, catalytic domain; CDH, cellobiose dehydrogenase; FT-IR, Fourier transform infrared spectrometer; GH, glycoside hydrolase; TEM, transmission electron microscope.
Trang 2regions of cellulose, whereas only a limited number
can hydrolyze crystalline cellulose [7]
Cellobiohydro-lase, belonging to glycoside hydrolase (GH) family 7,
is the major secreted protein of many cellulolytic fungi
and is one of the best studied of the enzymes
hydrolyz-ing crystalline cellulose to cellobiose [7–11] These
enzymes have a two-domain structure: a 50 kDa
catalytic domain (CD) and a small (3 kDa)
cellulose-binding domain (CBD) connected by a highly
O-gly-cosylated linker region [12–15] Loss of the CBD
causes a significant decrease of crystalline cellulose
decomposition, but has less effect on the hydrolysis of
soluble or amorphous cellulose [16], suggesting that
the adsorption of the enzyme on the surface via the
CBD is important for the effective hydrolysis of
crys-talline cellulose [17–21] However, if an excess amount
of the enzyme is adsorbed, the CD is unable to bind
appropriately to the cellulose chain owing to steric
interference by other enzyme molecules This is called
nonproductive binding [15], and the hydrolysis of
crys-talline cellulose is inhibited, even though the amount
of bound enzyme is increased [22]
Although the kinetics of crystalline cellulose
hydro-lysis by cellulases has been investigated intensively, it
remains difficult to compare findings, because of the
variability of cellulose samples The main reason for
this variability is the difference of surface area between
celluloses from different sources and⁄ or different
prep-arations When the hydrolytic activity of cellulase for
one cellulose sample is higher than that for another, it
is difficult to determine whether this is because the
sample has a larger surface area available to the
cellu-lase, or whether the sample is indeed more susceptible
to degradation In the present study, we therefore
investigated a novel approach to evaluate cellulase
kin-etics on solid substrates by using the surface density of
the enzyme (defined as the adsorbed amount of the
enzyme divided by the maximum adsorption of the
enzyme) as a parameter, in order to avoid the influence
of heterogeneity of crystalline cellulose
Results
Analysis of highly crystalline celluloses
Highly crystalline celluloses, cellulose Iafrom
Cladopho-raand cellulose Ibfrom Halocynthia and from
hydro-thermally treated Cladophora, were characterized by
transmission electron microscope (TEM), synchrotron
diffraction, and Fourier transform infrared spectrometer
(FT-IR) Electron micrographs (Fig 1A–C) showed
that cellulose microcrystals prepared by hydrochloric
acid treatment appear as slender rods, more than 1 mm
in length and about 20 nm wide Although the micro-graphs are very similar, differences were observed in the synchrotron X-ray fiber diffraction diagrams (Fig 1D– F) The diagrams of crystalline celluloses from Halocyn-thia (Fig 1E) and hydrothermally treated Cladophora (Fig 1F) were typical of resolved Ib patterns, whereas that of Cladophora cellulose showed patterns of both cellulose Ia and Ib The FT-IR spectra of the samples were different (Fig 2) The characteristic peaks of cellu-lose Ia(3240 cm)1) and cellulose Ib (3270 cm)1) in the spectrum of Cladophora cellulose were consistent with a mixture of 70% cellulose Ia and 30% cellulose Ib
(Fig 2A), whereas only the peak at 3270 cm)1was seen
in the spectra of Halocynthia (Fig 2B) and hydrother-mally treated Cladophora (Fig 2C) celluloses This is because the hydrothermal treatment converted Clado-phoracellulose Iato cellulose Ib
Adsorption of Cel7A on crystalline celluloses The enzyme concentration dependence of adsorbed Cel7A was estimated at various time points of tion Figure 3A shows the results at 120 min of incuba-tion and Fig 3B is the Scatchard plot (A-A⁄ [F]) of the data in Fig 3A Cellulose Ibfrom Halocynthia showed the highest adsorption of Cel7A, which was approxi-mately 1.5 times higher than that of cellulose Iafrom Cladophoraat all Cel7A concentrations tested Since the Scatchard plots (Fig 3B) for the three cellulose samples were all nonlinear, the binding of Cel7A cannot be fitted
to a simple Langmuir equation; instead, a two-binding site model (Eqn 1) should be employed for simulation The adsorption parameters obtained by simulation using Eqn 1 are summarized in Table 1 Although the adsorption constants for high-affinity binding (Kad1) varied among substrates, those for low-affinity binding (Kad2) were all quite similar The hydrothermal treat-ment, which converts cellulose Ia to cellulose Ib, decreased Kad1and increased A1, but had no effect on
Kad2or A2 The maximum amount of adsorbed enzyme (Amax) for cellulose Ib from Halocynthia was 3.2 ± 0.4 nmolÆmg cellulose)1, which was 1.5 times higher than that for cellulose Ia from Cladophora (2.2 ± 0.2 nmolÆmg cellulose)1)
Hydrolysis of highly crystalline celluloses The time course of changes in cellobiose concentration was monitored for various concentrations of Cel7A using highly crystalline celluloses as substrates Figure 4 shows the degradation of cellulose Iafrom Cladophora
as a representative result The hydrolysis of the crystalline cellulose was well fitted by the double
Trang 3expo-nential plot versus time (Eqn 7), which shows an initial
rapid increase followed by constant production of
cellobiose The cellobiose production increased with
increase of total Cel7A concentration up to 2.2 lm
(Abs2800.2), but decreased at higher concentrations
The velocities of cellobiose production were estimated
by differentiation of cellobiose concentration in the
reaction mixture, as described in Experimental
proce-dures, then plotted versus Cel7A concentration
Figure 5 shows the results obtained at the incubation
time of 120 min As expected from the time course
of cellobiose concentration, cellobiose production by
Cel7A from cellulose Ia increased with increasing
enzyme concentration, reaching a maximum value
(0.56 lmolÆmin)1) at a free enzyme concentration, [F],
of 1.3 lm, and then decreasing with further increase of
enzyme concentration to 0.42 lmolÆmin)1 at [F]¼
6.9 lm Similar patterns were obtained using cellulose Ib
from Halocynthia and hydrothermally treated
Cladopho-ra as substrates, although the concentration
provid-ing maximum cellobiose production was lower
([F]0.5 lm) than in the case of cellulose Ia from
Cladophora
Surface density plot of Cel7A
To analyze the difference between the hydrolytic properties towards cellulose Ia and cellulose Ib, the specific activity of adsorbed enzyme (k) was plotted versus surface density of Cel7A (q), as shown in Fig 6 The specific activity towards all crystalline celluloses was high at low surface density, but decreased with increase of the q-value, suggesting that the crowding of Cel7A on the surface of crys-talline celluloses causes a decrease of the activity The specific activity for cellulose Ia from Cladophora was approximately twice that for cellulose Ib from Halocynthia Interestingly, hydrothermal treatment caused a significant decrease of specific activity for Cladophora cellulose, and the q–k curve became quite similar to that for cellulose Ib from Halocynthia, although these celluloses had been prepared from different sources by different methods This suggests that the surface density plot compensates for the dif-ferent surface areas of crystalline celluloses, and reflects the specific activity of Cel7A for the crystal-line polymorphs
Fig 1 TEM pictures (top row) and synchrotron X-ray fiber diffraction diagrams (bottom row) of highly crystalline celluloses Bar indicates
500 nm (A) and (D) Cellulose I a from Cladophora; B and E, cellulose I b from Halocynthia; C and F, cellulose I b from hydrothermally treated Cladophora Circles in the bottom row indicate characteristic differences between cellulose Iaand cellulose Ib.
Trang 4Cellobiose production and high- and low-affinity
absorption were plotted versus surface density, as
shown in Fig 7 The cellobiose production reached
maximum at q¼ 0.4 (cellulose Ia from Cladophora)
and q¼ 0.3 (cellulose Ib from Halocynthia and
hydro-thermally treated Cladophora), suggesting that
suffi-cient space for another 1.5 or 2.3 enzyme molecules
per adsorbed molecule must be left free in order to
achieve optimum hydrolysis of crystalline cellulose
The surface density dependence at high- and
low-affin-ity adsorption sites (solid and dashed lines,
respect-ively) showed that the high-affinity curve almost
reaches saturation at the q-value of 0.4 (cellulose Ia) or
0.3 (cellulose Ib), whereas the low-affinity curve rises
linearly with increase of q Moreover, the cellobiose
production increased at lower concentration, where the
high-affinity adsorption was observed, whereas it
declined with increase of low-affinity adsorption These
results may indicate that the high- and low-affinity
binding curves represent the amounts of productive
and nonproductive enzyme, respectively
Discussion
The hydrolysis of crystalline cellulose has generally been
evaluated using microcrystalline cellulose [(Avicel),
FMC Corp, Newark, DE] as a substrate, but heterogen-eity of the substrate often causes variable results in the case of cellobiohydrolase [7,20] To avoid this difficulty, bacterial microcrystalline cellulose (BMCC) has been used as a homogeneous crystalline cellulose substrate instead [22–24] However, as we have shown, the proper-ties of BMCC as a substrate of cellulase are strongly dependent on the preparation conditions [25] In the present study, we wished to compare the highly crystal-line celluloses from Cladophora and Halocynthia, and faced difficulties in evaluating their hydrolysis, presuma-bly because of the differences of surface area and⁄ or sur-face structure There are several techniques to estimate the surface area of solid cellulose from the amounts of
A
B
Fig 3 Enzyme concentration dependence of the amount of adsorbed Cel7A (A) and Scatchard plot (B). n, cellulose Ia from Cladophora; s, cellulose I b from Halocynthia; d, cellulose I b from hydrothermally treated Cladophora The adsorption of Cel7A was measured after incubation for 120 min with 1 mgÆmL)1of crystalline cellulose at 30 C as described in Experimental procedures The lines represent fitting the data to Eqn 1 in Experimental procedures.
A
B
C
Fig 2 FT-IR spectra of highly crystalline celluloses A, cellulose Ia
from Cladophora; B cellulose Ib from Halocynthia; C, cellulose Ib
from hydrothermally treated Cladophora Dotted line shows
charac-teristic peaks of cellulose Ia and cellulose Ibat 3240 cm)1 (right)
and 3270 cm)1(left), respectively.
Trang 5bound small molecular compounds, such as nitrogen,
water or dye, but the results cannot be used to evaluate
the surface area available to cellulases, since CBDs are
adsorbed only on limited regions of crystalline cellulose,
mainly hydrophobic surfaces, as demonstrated
previ-ously [26–29] Therefore, we developed the novel
con-cept of using surface density as a parameter to express
the adsorption of cellobiohydrolase relative to the
maxi-mum amount of adsorption of the enzyme (Amax), in
order to obtain the specific activity of Cel7A for
crystal-line cellulose
This approach has several advantages: (1) Amax
pro-vides a measure of the surface area of crystalline
cellu-lose available as a substrate of cellulase It is reported
that cellulose Ibfrom Halocynthia has a greater
hydro-phobic surface than cellulose Ia from Cladophora [30]
Indeed, in the present study, Amax of Cel7A on
cellu-lose Ib from Halocynthia was 1.5 times higher than
that on cellulose Ia from Cladophora (2) Generally,
specific activity of cellulase is evaluated based on
the amount of added enzyme However, this is
Fig 5 Free enzyme concentration dependence of cellobiose pro-duction by Cel7A after incubation for 120 min.n, cellulose Iafrom Cladophora; s, cellulose Ibfrom Halocynthia; d, cellulose Ibfrom hydrothermally treated Cladophora The rate of cellobiose produc-tion was estimated by the fitting the time course of cellobiose con-centration to Eqn 7, and by calculation using Eqn 8.
Fig 6 Surface density dependence of specific activity for adsorbed enzyme after incubation for 120, 180, 240, and 320 min.n, cellu-lose I a from Cladophora; s, cellulose I b from Halocynthia; d, cellu-lose Ib from hydrothermally treated Cladophora q- and k-values were estimated by using Eqns 3 and 9, respectively.
Table 1 Adsorption parameters of highly crystalline celluloses for Cel7A The adsorption parameters were calculated by nonlinear fitting of the data after incubation for 120, 180, 240, 320 min to Eqn 1.
Hydrothermally
treated Cladophora
a
l M )1,b
nmolÆmg cellulose)1.
Fig 4 Time course of cellobiose production from Cladophora
cellu-lose by Cel7A The total concentration of Cel7A in the reaction
mix-ture was as follows:n, 0.40 l M ; d, 0.84 l M ; m, 1.3 l M ; h, 2.2 l M ;
s , 4.3 l M ; n, 8.6 l M The cellobiose concentration in the reaction
mixture was measured with a CDH–cytochrome c redox system as
described in Experimental procedures.
Trang 6inappropriate for cellobiohydrolases, since only
adsorbed enzyme represents ‘working enzyme’ which
generates the product (cellobiose) Therefore, we
should evaluate the specific activity of adsorbed
enzyme (3) During the hydrolytic process, the shape
and surface area of the solid substrate should change
with the reaction time By using surface density as a
parameter, however, we can monitor the changes of
surface area and compensate for them, whether they
arise from the nature of the cellulose preparations, or
from changes during hydrolysis In the present study, indeed, the Amax values decreased slightly with increas-ing incubation time, perhaps because of a reduction of the surface area owing to enzymatic degradation (data not shown) However, cellobiose production also decreased correspondingly with increasing incubation time, suggesting that the surface density plot can allow for the real-time changes of the substrate caused by the enzymatic reaction
In nature, there are two crystalline polymorphs of cellulose, celluloses Iaand Ib[1–3], and cellulose Iahas been reported to be degraded much faster than cellu-lose Ib [31,32] To analyze the differences in degrada-bility in detail, we prepared three crystalline cellulose samples, Ia-rich crystalline cellulose from Cladophora, natural cellulose Ib from Halocynthia, and cellulose Ib generated by hydrothermal treatment of Cladophora cellulose, and we compared the hydrolysis of these samples by Cel7A The q–k plot of Cel7A (Fig 6) clearly indicates that the higher degradability of cellu-lose Iais mainly due to a higher specific activity of the enzyme for this substrate than for cellulose Ib, but is not due to a larger surface area As hydrothermal treatment does not cause any change of shape of cellu-lose microfibrils [33], differences of specific activity should reflect differences in the arrangements of cellu-lose chains in the two crystalline polymorphs Quite recently, the detailed structures of celluloses Ia and Ib
were solved by synchrotron X-ray and neutron fiber diffraction analyses [4,5] The top views of the hydro-phobic surfaces of celluloses Iaand Ibare compared in Fig 8 If cellulose chains of the first layer (colored cyan) are superimposed in the two crystalline poly-morphs, the cellobiose units in the second layer of cel-luloses Ia (colored yellow) are completely opposed to those of cellulose Ib(colored green) This suggests that Cel7A can distinguish this difference between the first and second layers of crystalline celluloses A possible reason for this is that the structural difference may cause a difference of steric hindrance at CBD or CD, and thus may affect the processivity of Cel7A on the crystalline celluloses [8,22,34]
The enzyme concentration dependence of absorp-tion ([F]–A plot; Fig 3A) fitted well to the two-bind-ing site equation reported by Sta˚hlberg et al [16] In addition, when the high- and low-affinity adsorption curves and cellobiose production were plotted versus surface density (Fig 7), it appeared that cellobiose production increased in the high-affinity phase of adsorption, whereas it was apparently inhibited with increase of low-affinity binding This may be because high-affinity adsorption involves both CD and CBD (productive binding), whereas low-affinity adsorption
A
B
C
Fig 7 Surface density dependence of high- (solid line) and
low-affinity (dashed line) adsorption of Cel7A with plot of cellobiose
pro-duction These lines are drawn using the parameters in Table 1,
and the plots were obtained from the results after incubation for
120, 180, 240, and 320 min A, cellulose Iafrom Cladophora; B,
cel-lulose Ibfrom Halocynthia; C, cellulose Ibfrom hydrothermally
trea-ted Cladophora.
Trang 7may involve only CBD (nonproductive binding) In
Table 1, moreover, a higher Kad1-value was observed
for cellulose Ia than cellulose Ib, although Kad2 for
all samples were quite similar to each other This
phenomenon might be explained by the different
affinity of productive binding, i.e CD of Cel7A may
hold cellulose Ia more tightly than cellulose Ib,
resulting in higher cellobiose production from
cellu-lose Ia than cellulose Ib at same q-value Since low
affinity (nonproductive) binding contributes much
more to the total amount of adsorbed enzyme than
high-affinity (productive) binding, a drastic decrease
of specific activity is observed with increase of q, as
shown in Fig 7 To elucidate the relationship
between adsorption and hydrolysis, further
experi-ments with mutant enzymes and detailed kinetic
studies will be necessary
The simple analytical method used in the present
study, i.e measuring the adsorption of the enzyme and
the concentration of products in the same reaction
mixture, makes it possible to evaluate the enzyme
kin-etics at a solid–liquid interface This approach not only
provides novel insights into cellulose–cellulase
interac-tion, but also should be relevant to many other
enzymes acting on insoluble substrates having a limited
surface area
Experimental procedures
Cellulose and enzyme preparations
Cellulose samples from green alga Cladophora sp and
tunicate Halocynthia roretzi were used in this study They
were purified by repeated treatments with 5% KOH and 0.3% NaClO2 solutions [35], then broken into small frag-ments using a double-cylinder type homogenizer The Cladophora cellulose was further hydrothermally treated
in 0.1 m NaOH solution at 260C [33] The cellulose samples thus obtained were hydrolyzed with 4 m HCl solution at 80C for 6 h, and then suspensions of cellu-lose microcrystals dispersed in water were prepared as reported previously [36]
Cel7A from Trichoderma viride (formerly known as cello-biohydrolase I) was purified from a commercial cellulase mixture, Meicelase (Meiji Seika Kaisha Co., Ltd, Tokyo, Japan) as described previously [25,37] Recombinant cello-biose dehydrogenase (CDH) was produced by Pichia pastoris and purified from the culture filtrate as described previously [38] The purity of these enzymes was confirmed
by SDS⁄ PAGE No detectable contamination of b-glu-cosidase or hydroxyethylcellulose-degrading activity was observed in Cel7A or CDH
Analysis of highly crystalline celluloses
Dilute suspensions of crystalline celluloses were dropped on carbon-coated copper grids, allowed to dry, and observed with a JEOL 2000EX TEM (Jeol Ltd., Tokyo, Japan), operating at 200 kV under diffraction contrast in the bright-field mode [39]
For the X-ray fiber diffraction analysis, oriented films
of cellulose microcrystals were prepared as previously reported [40] The X-ray fiber patterns were obtained on
a flat imaging plate, R-AXIS IV++(Rigaku Corporation, Tokyo, Japan), at room temperature using synchrotron radiation with a wavelength of 0.1 nm in beam line BL40B2 at the SPring-8 facility in Japan
Fig 8 Views of the hydrophobic surfaces
of cellulose I a (left) and cellulose I b (right).
The cellulose chains in the first layer are
su-perimposed and colored cyan The chains in
the second layer are colored yellow
(cellu-lose I a ) and green (cellulose I b ) The
struc-tures are based on the results reported by
Nishiyama et al [4,5].
Trang 8Dilute suspensions were cast on glass plates and the dried
films were analyzed with a JASCO FT-IR 615 spectrometer
(JASCO Corporation, Tokyo, Japan) in the region of
4000Ờ400 cm)1; 64 scans of 4 cm)1 resolution were
signal-averaged and stored
Adsorption of Cel7A on crystalline celluloses
Crystalline cellulose (0.1% w⁄ v) was incubated with various
concentrations of enzymes (total concentration,
Abs2800.04Ờ1.6) in 1 mL of 50 mm sodium acetate buffer,
pH 5.0, at 30C using an end-over-end mixer (12 r.p.m.)
The mixture was centrifuged (15 000 gở 30 s) to terminate
the reaction after incubation for 15, 30, 60, 120, 180, 240,
and 320 min, and the supernatant (900 lL) was collected
The absorbance at 280 nm of the supernatant was measured
after the termination of the enzymatic reaction, and the
con-centration of free enzyme [F] (lm) was determined based on
an absorption coefficient at 280 nm of 88 250 m)1ẳcm)1for
T viride Cel7A, estimated from the amino acid sequence
of the enzyme [41] The amount of adsorbed enzyme (A,
nmolẳmg cellulose)1) was calculated by subtraction of the
amount of free enzyme from the amount of added enzyme, as
described previously [16,22,23,42] The amount of adsorbed
enzyme was plotted versus free enzyme concentration, based
on a two-binding-site model for Cel7A analysis [16], using
the following equation:
AỬ A1=đ1=Kad1ợ ơFỡ ợ A2=đ1=Kad2ợ ơFỡ đ1ỡ
where A1and A2are the adsorption maxima of high- and
low-affinity binding (nmol⁄ mg-cellulose); Kad1 and Kad2are the
adsorption constants of the high- and low-affinity binding
sites (lm)1) The maximum amount of adsorbed enzyme
(Amax, nmolẳmg cellulose)1) and the surface density (q) of
Cel7A were defined according to the following equations:
Measurement of cellobiose formation
The concentration of cellobiose formed in the supernatant
was estimated from the amount of cytochrome c reduced by
CDH, as follows The supernatant (after incubation for 15,
30, 60, 120, 180, 240, and 320 min) was kept at 4C for 18 h
to allow the anomeric configuration to reach equilibrium
The supernatant (100 lL) was then incubated for 3 min with
200 nm recombinant CDH and 50 lm cytochrome c (bovine
heart, Wako Pure Chemical Industries, Ltd, Osaka, Japan)
in 50 mm sodium acetate buffer, pH 4.0, at 30C, and the
absorbance at 525.6 (Abs525.6: isosbestic point of oxidized
and reduced cytochrome c) and 550.0 nm (Abs550.0) were
measured The reduced cytochrome c concentrations were
calculated using the following equations
Abs550:0Ử eox
550:0ơCox ợ ered
550:0ơCred đ4ỡ Abs525:6Ử e525:6đơCox ợ ơCredỡ đ5ỡ
ơCred Ử đe525:6Abs550:0 eox
550:0ered 550:0Abs525:6ỡ=
e525:6đered 550:0 eox
where eox 550:0(Ử 7.80 mm)1ẳcm)1) and ered
550:0(Ử 25.8 mm)1ẳcm)1) are the absorption coefficients at 550.0 nm for oxidized and reduced cytochrome c, respectively; e525.6 (Ử 10.2
mm)1ẳcm)1) is the absorption coefficient of cytochrome c
at 525.6 nm; [Cox] and [Cred] are the concentrations of oxid-ized and reduced cytochrome c, respectively The proportion
of b-anomer in cellobiose was estimated to be 64.9 ổ 0.4%
at the temperature employed in the present study, and it was assumed that two moles of cytochrome c is reduced by one mole of b-anomeric cellobiose Examination of the cellobiose concentration after 18 h incubation at 4C indicated that further hydrolysis was minimal (< 2 lm), and this was con-firmed by comparison of the cellobiose concentrations in reaction mixtures containing supernatant with and without ultrafiltration Since precipitation prevented the measure-ment of cellobiose concentration at the highest enzyme con-centration (Abs2801.6), these data was eliminated from the results
Analysis of the rate of cellobiose production from crystalline celluloses
The rate of cellobiose production at various time points was estimated from fitting of cellobiose concentrations in the reaction mixtures to the following equation based on Vaẽljamaẽe et al [22]:
Pđtỡ Ử ađ1 ebtỡ ợ cđ1 edtỡ đ7ỡ where P(t) is the cellobiose concentration (lm); t is time (min); and a, b, c, and d are empirical constants The rate
of cellobiose production (v) was calculated by the differenti-ation of Eqn 7 as follows:
vỬ dPđtỡ=dt Ử a b ebtợ c d edt đ8ỡ Thus, the specific activity of adsorbed enzyme k (min)1) was defined as follows:
In order to evaluate the steady-state reaction of Cel7A, the rate of cellobiose production and the specific activity were calculated from the data points after incubation for 120,
180, 240, and 320 min It must be pointed out that we have used Eqns 7 and 8 only for estimating the rate of cellobiose production at each time point We do not include any phys-ical interpretation to the equations or the constants since they are empirical
Trang 9The authors are grateful to Professor Gunnar
Johans-son (Department of Biochemistry, University of
Upp-sala) for valuable discussions about the kinetics of
cellobiohydrolases We thank Dr K Noguchi (Tokyo
University of Agriculture and Technology, Tokyo,
Japan) for his help during the synchrotron radiation
experiments, which were performed at BL40B2 in
SPring-8 with the approval of the Japan Synchrotron
Research Institute (JASRI) (Proposal no
2002A0435-NL2-np) This research was supported by a
Grant-in-Aid for Scientific Research to MS (no 17380102)
from the Japanese Ministry of Education, Culture,
Sports and Technology, and a Research Fellowship to
RH from the Japan Society for the Promotion of
Science
References
1 Atalla RH & Vanderhart DL (1984) Native cellulose A
composite of two distinct crystalline forms Science 223,
283–285
2 Sugiyama J, Vuong R & Chanzy H (1991) Electron
diffraction study on the two crystalline phases occurring
in native cellulose from an algal cell-wall
Macromole-cules 24, 4168–4175
3 Vanderhart DL & Atalla RH (1984) Studies of
micro-structure in native celluloses using solid-state13C NMR
Macromolecules 17, 1465–1472
4 Nishiyama Y, Langan P & Chanzy H (2002) Crystal
structure and hydrogen-bonding system in cellulose Ib
from synchrotron X-ray and neutron fiber diffraction
J Am Chem Soc 124, 9074–9082
5 Nishiyama Y, Sugiyama J, Chanzy H & Langan P
(2003) Crystal structure and hydrogen bonding system
in cellulose Iafrom synchrotron X-ray and neutron fiber
diffraction J Am Chem Soc 125, 14300–14306
6 Sugiyama J, Okano T, Yamamoto H & Horii F (1990)
Transformation of Valonia cellulose crystals by an
alka-line hydrothermal treatment Macromolecules 23, 3196–
3198
7 Teeri TT (1997) Crystalline cellulose degradation: new
insight into the function of cellobiohydrolases Trends
Biotechnol 15, 160–167
8 Divne C, Sta˚hlberg J, Reinikainen T, Ruohonen L,
Pettersson G, Knowles JK, Teeri TT & Jones TA (1994)
The three-dimensional crystal structure of the catalytic
core of cellobiohydrolase I from Trichoderma reesei
Science 265, 524–528
9 Divne C, Sta˚hlberg J, Teeri TT & Jones TA (1998)
High-resolution crystal structures reveal how a cellulose chain
is bound in the 50 A˚ long tunnel of cellobiohydrolase I
from Trichoderma reesei J Mol Biol 275, 309–325
10 Reinikainen T, Srisodsuk M, Jones A & Teeri TT (1993) Enzymatic hydrolysis of crystalline cellulose by Trichoderma reeseicellobiohydrolase I Protein Eng 6, 49–49
11 Teeri TT, Koivula A, Linder M, Wohlfahrt G, Divne C
& Jones TA (1998) Trichoderma reesei cellobiohydro-lases: why so efficient on crystalline cellulose? Biochem Soc Trans 26, 173–178
12 Abuja PM, Schmuck M, Pilz I, Tomme P, Claeyssens
M & Esterbauer H (1988) Structural and functional domains of cellobiohydrolase I from Trichoderma reesei:
a small angle X-ray scattering study of the intact enzyme and its core Eur Biophys J Biophys 15, 339– 342
13 Johansson G, Sta˚hlberg J, Lindeberg G, Engstrom A & Pettersson G (1989) Isolated fungal cellulase terminal domains and a synthetic minimum analog bind to cellu-lose FEBS Lett 243, 389–393
14 Shoemaker S, Schweickart V, Ladner M, Gelfand D, Kwok S, Myambo K & Innis M (1983) Molecular clon-ing of exo-cellobiohydrolase I derived from Trichoderma reeseiStrain-L27 Bio⁄ Technology 1, 691–696
15 Tomme P, Van Tilbeurgh H, Pettersson G, Van Damme
J, Vandekerckhove J, Knowles J, Teeri T & Claeyssens
M (1988) Studies of the cellulolytic system of Tricho-derma reeseiQM 9414: analysis of domain function in two cellobiohydrolases by limited proteolysis Eur J Biochem 170, 575–581
16 Sta˚hlberg J, Johansson G & Pettersson G (1991) A new model for enzymatic hydrolysis of cellulose based on the two-domain structure of cellobiohydrolase I Bio⁄ Technology 9, 286–290
17 Lee YH & Fan LT (1982) Kinetic studies of enzymatic hydrolysis of insoluble cellulose: analysis of the initial rates Biotechnol Bioeng 24, 2383–2406
18 Lee YH & Fan LT (1983) Kinetic studies of enzymatic hydrolysis of insoluble cellulose (II) Analysis of extended hydrolysis times Biotechnol Bioeng 25, 939– 966
19 Nidetzky B, Steiner W & Claeyssens M (1994) Cellulose hydrolysis by the cellulases from Trichoderma reesei: adsorptions of two cellobiohydrolases, two endocellu-lases and their core proteins on filter paper and their relation to hydrolysis Biochem J 303, 817–823
20 Sattler W, Esterbauer H, Glatter O & Steiner W (1989) The effect of enzyme concentration on the rate
of the hydrolysis of cellulose Biotechnol Bioeng 33, 1221–1234
21 Steiner W, Sattler W & Esterbauer H (1988) Adsorption
of Trichoderma reesei cellulase on cellulose: experimen-tal data and their analysis by different equations Biotechnol Bioeng 32, 853–865
22 Va¨ljama¨e P, Sild V, Pettersson G & Johansson G (1998) The initial kinetics of hydrolysis by cellobiohydrolases I
Trang 10and II is consistent with a cellulose surface – erosion
model Eur J Biochem 253, 469–475
23 Gilkes NR, Jervis E, Henrissat B, Tekant B, Miller RC
Jr, Warren RA & Kilburn DG (1992) The adsorption of
a bacterial cellulase and its two isolated domains to
crystalline cellulose J Biol Chem 267, 6743–6749
24 Va¨ljama¨e P, Sild V, Nutt A, Pettersson G & Johansson G
(1999) Acid hydrolysis of bacterial cellulose reveals
differ-ent modes of synergistic action between cellobiohydrolase
I and endoglucanase I Eur J Biochem 266, 327–334
25 Samejima M, Sugiyama J, Igarashi K & Eriksson K-EL
(1997) Enzymatic hydrolysis of bacterial cellulose
Car-bohydr Res 305, 281–288
26 Linder M, Mattinen ML, Kontteli M, Lindeberg G,
Sta˚hlberg J, Drakenberg T, Reinikainen T, Pettersson G
& Annila A (1995) Identification of functionally
impor-tant amino acids in the cellulose-binding domain of
Trichoderma reeseicellobiohydrolase I Protein Sci 4,
1056–1064
27 Mattinen ML, Kontteli M, Kerovuo J, Linder M,
Annila A, Lindeberg G, Reinikainen T & Drakenberg T
(1997) Three-dimensional structures of three engineered
cellulose-binding domains of cellobiohydrolase I from
Trichoderma reesei Protein Sci 6, 294–303
28 Reinikainen T, Ruohonen L, Nevanen T, Laaksonen L,
Kraulis P, Jones TA, Knowles JKC & Teeri TT (1992)
Investigation of the function of mutated
cellulose-bind-ing domains of Trichoderma reesei cellobiohydrolase I
Proteins 14, 475–482
29 Lehtio J, Sugiyama J, Gustavsson M, Fransson L,
Linder M & Teeri TT (2003) The binding specificity and
affinity determinants of family 1 and family 3 cellulose
binding modules P Natl Acad Sci USA 100, 484–489
30 Helbert W, Nishiyama Y, Okano T & Sugiyama J
(1998) Molecular imaging of Halocynthia papillosa
cellu-lose J Struc Biol 124, 42–50
31 Hayashi N, Sugiyama J, Okano T & Ishihara M (1997)
The enzymatic susceptibility of cellulose microfibrils of
the algal-bacterial type and the cotton-ramie type
Carbohyd Res 305, 261–269
32 Hayashi N, Sugiyama J, Okano T & Ishihara M (1997)
Selective degradation of the cellulose Iacomponent in
Cladophoracellulose with Trichoderma viride cellulase Carbohydr Res 305, 109–116
33 Yamamoto H, Horii F & Odani H (1989) Structural changes of native cellulose crystals induced by annealing
in aqueous alkaline and acidic solutions at high tem-peratures Macromolecules 22, 4130–4132
34 Kipper K, Va¨ljama¨e P & Johansson G (2005) Processive action of cellobiohydrolase Cel7A from Trichoderma reeseiis revealed as ‘burst’ kinetics on fluorescent poly-meric model substrates Biochem J 385, 527–535
35 Sugiyama J, Persson J & Chanzy H (1991) Combined infrared and electron diffraction study of the poly-morphism of native celluloses Macromolecules 24, 2461–2466
36 Araki J, Wada M, Kuga S & Okano T (1998) Flow properties of microcrystalline cellulose suspension pre-pared by acid treatment of native cellulose Colloid Surface A 142, 75–82
37 Imai T, Boisset C, Samejima M, Igarashi K & Sugiyama
J (1998) Unidirectional processive action of cellobiohy-drolase Cel7A on Valonia cellulose microcrystals FEBS Lett 432, 113–116
38 Yoshida M, Ohira T, Igarashi K, Nagasawa H, Aida K, Hallberg BM, Divne C, Nishino T & Samejima M (2001) Production and characterization of recombinant Phanerochaete chrysosporiumcellobiose dehydrogenase
in the methylotrophic yeast Pichia pastoris Biosci Biotechnol Biochem 65, 2050–2057
39 Wada M & Okano T (2001) Localization of Iaand Ib
phases in algal cellulose revealed by acid treatments Cellulose 8, 183–188
40 Nishiyama Y, Kuga S, Wada M & Okano T (1997) Cellulose microcrystal film of high uniaxial orientation Macromolecules 30, 6395–6397
41 Pace CN, Vajdos F, Fee L, Grimsley G & Gray T (1995) How to measure and predict the molar absorp-tion coefficient of a protein Protein Sci 4, 2411–2423
42 Samejima M, Ohkubo T, Igarashi K, Isogai A, Kuga S, Sugiyama J & Eriksson K-EL (1997) The behaviour of Phanerochaete chrysosporiumcellobiose dehydrogenase
on adsorption to crystalline and amorphous celluloses Biotechnol Appl Biochem 25, 135–141