In the first crystal form, the tetrameric structure is symmetrical, with the active site loop in each subunit folded into a b-hairpin conformation.. The active site loop residues 22–42 co
Trang 1phosphatase (TM1415) from the hyperthermophile,
Thermotoga maritima
Kimberly A Stieglitz1, Mary F Roberts1, Weizhong Li2and Boguslaw Stec2
1 Merkert Chemistry Center, Boston College, Chestnut Hill, MA, USA
2 The Burnham Institute for Medical Research, La Jolla, CA, USA
The extended inositol monophosphatase (IMPase)⁄
fructose-1,6-bisphosphatase (FBPase) family provides
an interesting case in which the changes in 3D
archi-tecture and structural flexibility can be linked to
increased specialization and emergence of new
func-tion This structural family was identified at the
begin-ning of the 1990s [1,2] Since then, the rapid progress
in genome sequencing has added many new members
At present, the family contains around 1000 sequences,
classified in three Pfam5 subfamilies, of which 600
are in the IMPase subfamily Despite having the same
architectural features at the single monomer level, the
proteins in this family show increasingly complex
oligomeric organization The inositol polyphosphate
1-phosphatases and 3¢-phosphoadenosine-5¢-phosphate
phosphatases are monomeric Most of the IMPases are
dimeric, although the Escherichia coli enzyme (also
known as SuhB) can be monomeric as well as dimeric
[3] All of the eukaryotic FBPases are tetrameric, and some are allosterically regulated by AMP [4] or oxida-tion of disulfides [5]
The IMPases in higher eukaryotes are involved in secondary messenger signaling by regenerating the myo-inositol pool, whereas the bacterial and archaeal counterparts may be involved in osmolyte synthesis, as has been postulated for the IMPase from
Thermoto-ga maritima (TM1415) [6] Members of this family show reactivity towards several substrates, including poly phosphorylated inositol species and
phosphorylat-ed nucleotides A few IMPase enzymes from hyper-thermophilic organisms also catalyze the hydrolysis of the 1-phosphate of FBP; these have specific FBPase, as well as IMPase, activities [7] We have previously solved two structures from this superfamily – Metha-nocaldoccocus jannashii IMPase (MJ0109) [7,8] and Archaeoglobus fulgidus IMPase (AF2372) [9] – and in
Keywords
fructose-1, 6-bisphosphatase; inositol
monophosphatase; protein folding;
thermophile; Thermotoga maritima
Correspondence
B Stec, The Burnham Institute, 10901 N.
Torrey Pines Road, La Jolla, CA 92037, USA
Fax: +1 858 7139948
Tel: +1 858 7955257
E-mail: bstec@burnham.org
(Received 15 December 2006, revised 5
March 2007, accepted 8 March 2007)
doi:10.1111/j.1742-4658.2007.05779.x
The structure of the first tetrameric inositol monophosphatase (IMPase) has been solved This enzyme, from the eubacterium Thermotoga maritima, similarly to its archaeal homologs exhibits dual specificity with both IMPase and fructose-1,6-bisphosphatase activities The tetrameric structure
of this unregulated enzyme is similar, in its quaternary assembly, to the allosterically regulated tetramer of fructose-1,6-bisphosphatase The individual dimers are similar to the human IMPase Additionally, the structures of two crystal forms of IMPase show significant differences In the first crystal form, the tetrameric structure is symmetrical, with the active site loop in each subunit folded into a b-hairpin conformation The second form is asymmetrical and shows an unusual structural change Two of the subunits have the active site loop folded into a b-hairpin structure, whereas in the remaining two subunits the same loop adopts an a-helical conformation
Abbreviations
AF2372, IMPase from Archaeoglobus fulgidus; FBPase, fructose-1,6-bisphosphatase; IMPase, inositol 1-phosphate phosphatase;
TM1415, IMPase from Thermotoga maritima; MJ0109, IMPase from Methanocaldococcus jannaschii.
Trang 2this report we present the structure for TM1415, the
IMPase⁄ FBPase from T maritima
The proteins in the family share a common
mono-mer architecture and have common principles of
chem-ical reactivity A three metal ion-assisted catalytic
mechanism was proposed to function in the entire
fam-ily [8,10] It has also been suggested that the enzymes
might have a common origin in a postulated ancient
cyclitol phosphatase [7] One of the common elements
of this architecture is a loop that closes the active site
once the substrate binds Many of the eukaryotic
members of this family (including Homo sapiens
IMPase, inositol polyphosphate 1-phosphatase, and
FBPase) are inhibited by submillimolar concentrations
of lithium ions [11–13] Li+ therapy is an important
remedy against common mental disorders [14], and
inhibition of some of the human IMPase family
enzymes is believed to be responsible for these
thera-peutic effects We have proposed that the mobile loop
is the determinant of sensitivity to Li+[9]
In this report we provide an interesting addition to
this already intriguing protein family – the crystal
structure of an IMPase (from the hyperthermophile
T maritima) that has a tetrameric arrangement and is
also the most active IMPase known [6] Additionally, a
fragment of this IMPase (TM1415) shows unusual
structural duality The active site loop (residues 22–42)
comes into the direct lattice contact with itself In one
subunit it has an a helical conformation, whereas its
partner is in a b conformation Because this fragment
plays a crucial role in catalytic activity and may also
be involved in Li+ inhibition, the structural duality
supports the idea by Dunker & Wright [15,16], that
flexible protein fragments might be involved in
devel-oping new functionalities in proteins
Results and Discussion
Structure solution
TM1415 was expressed in E coli and purified as
des-cribed previously [6] The purified enzyme was
crystal-lized in two crystal forms, characterized by space
groups P21 and P212121 The structure was solved by
molecular replacement (molrep) [17] The structure of
both crystal forms showed a tetrameric arrangement of
this enzyme (Fig 1) More specifically, both crystal
forms contained a single tetramer in the asymmetric
unit The corresponding models were refined using cns
[18] at 2.2 and 2.4 A˚ resolution for forms 1 and 2,
respectively Refinement resulted in an R-factor of
0.209 and 0.178 (Rfree, 0.278 and 0.267) for forms 1
and 2, respectively (Table 1) Stereochemistry
meas-ures, such as the Ramachandran plot and backbone and side-chain statistics, were well within the expected values, as indicated by procheck [19] The electron density was very good throughout both models (sup-plementary Fig S1) with the exception of loop regions, and in particular two catalytic loops (22–42,60–72) on one side of the tetramer in the second crystal form The C-terminal region appeared to be much more mobile, as reflected by increased temperature factors The model for crystal form 1 contains the terminal Lys256, whereas the model for crystal form 2 was ter-minated at Gly254
The difference in electron density suggested the pres-ence of multiple water molecules, as well as a single
Mg2+in the active site of crystal form 1 (supplement-ary Fig S1) This metal ion is found in a classical octahedral coordination with Asp79, Glu65 side-chain carboxyls, the carbonyl of Ile81 and three water mole-cules as direct ligands In crystal form 2, the difference
in electron densities suggested the presence of a single tartaric acid molecule per active site The tetramer
of crystal form 1 is quite symmetrical, whereas the tetramer of crystal form 2 is highly asymmetrical (Table 2) The refined models of both forms contain
300 water molecules
Monomer architecture: common family structure
As with other enzymes in this family, including FBPases, the protein has a well-preserved layered struc-ture of a and b secondary-strucstruc-ture elements (a-b-a-b-a) (Fig 1, left panels), falling into two domains The lower domain consists of a layer of two a-helices and
an extensive seven-stranded b-sheet containing the act-ive site The lower domain is reminiscent of the AMP-binding domain of eukaryotic FBPases (supplementary Fig S2) The active site is located at the bulge of the C-terminal end of the third strand with a characteristic DPXD motif, where both aspartates participate in metal ion binding The strand is followed by a two-turn a-helix that forms a phosphate-binding site The second domain has a three-layer motif with two layers
of a-helices flanking the second b-sheet This domain corresponds to the FBP-binding domain of FBPases The two helices of the first domain are connected by a mobile active site loop that previously was suggested
to modulate activity by co-ordinating the third metal ion needed for catalysis [8,10] This loop was also sug-gested to be involved in Li+inhibition [9] The average temperature factors for both domains oscillate below
40 A˚2, with helices being much more ordered than the connecting loops (See supplementary Fig S3 for the temperature factor profiles of both models.)
Trang 3Dimer architecture: similarity to human IMPase
Despite being a bacterial enzyme and having
signifi-cant sequence divergence, the overall architecture of
the dimer is reminiscent of the human IMPase (Fig 1,
right panel) However, the dimer interface is quite
dif-ferent from the human enzyme and other nonarchaeal
IMPases The superposition of the second subunit of
the MJ0109 structure (1G0H) after superposition of
the first subunit requires a rotation of 15 along the
longest axis of the dimer in one direction, whereas
superposition onto the second subunit of the human
enzyme (1AWB) requires rotation of 15 in the
opposite direction The rotation around the axis that
intersects the self-contacting residue, Ile173, is denoted
as the dimer twist-angle To superpose the second
sub-unit on the structure of the eukaryotic FBPase takes a
30 rotation in the twist direction of the archaeal
enzyme In comparing the dimer orientation of all
these IMPases, we see that the human IMPase has the
extreme dimer twist-angle that is almost 45 off from
the dimer position in FBPases, whereas the TM1415 and MJ0109 constitute intermediate twists spaced 15 off each other (central panel of Fig 1)
Tetramer architecture: similarity to FBPase TM1415, besides being the most active IMPase ( 100-fold more active than its archaeal, bacterial or eukaryotic counterparts) [6], is also a very efficient FBPase [7] It is notable that the TM1415 structure represents a tetrameric organization for an IMPase (Fig 1) reminiscent of the eukaryotic FBPase organ-ization Each tetramer is organized as a dimer of dimers (Fig 1) Despite the fact that TM1415 lacks the additional helix (FBPases have three helices at the tetramer interface), the helical layers in both enzymes directly interact This dimer–dimer interface was shown to be crucial for the transition of the allosteric signal in pig kidney FBPase [20] The rotation around the axis that relates dimers is termed the tetramer twist-angle The TM1415 tetramer, despite having a
Fig 1 Schematic of the transformation of
TM1415 into the eukaryotic FBPase The
transformation requires 25 rotation of the
dimers around the tetramer axis and 30
rotation of the monomers in individual
dimers In the center there is a schematic
of the mutual relationship of the monomers,
in selected members of the family, as
indi-cated by the twist angle of the dimer.
TM1415 constitutes one of the
intermedi-ates between the human IMPase and
FBPase dimer organization In the
surround-ing panels, clockwise, startsurround-ing at the top
left, are the structure of the tetrameric
TM1415, the superposition of TM1415 with
the Homo sapiens (human) IMPase (in gold),
the superposition of Sus scrofa (pig) FBPase
with the MJ0109 (in blue), and the
tetramer-ic pig FBPase The secondary structure
ele-ments are marked in red (helices) and
yellow (b-sheets).
Trang 4similar quaternary arrangement to eukaryotic FBPases,
is more twisted, and the lower dimer requires 25
rotation to superpose with the corresponding dimer of
the R-state FBPase It can be compared with an
over-rotated T state (the eukaryotic T state is over-rotated only 17 away from the R state, Fig 1) [21] As indicated in the central panel of Fig 1, a rotation of 25 in tetr-amer twist, and an additional dimer twist in both dimers of 30, are required to transform TM1415 into the FBPase
This nonregulated tetrameric organization of the
T maritima IMPase⁄ FBPase might represent an evolu-tionary intermediate between dimeric IMPases and the allosterically regulated tetrameric eukaryotic FBPases
As a reminder, not all eukaryotic FBPases are alloster-ically regulated by AMP (e.g chloroplast FBPase) [5] However, the quaternary structures of these IMPase and FBPases suggest that quaternary organization may
be critical in creating regulatory abilities
Crystal packing Both crystal forms of TM1415 have a tetramer present
in the asymmetric unit with similar packing of individ-ual tetramers However, in crystal form 2, the packing
is not as tight as in crystal form 1 In crystal form 1 (P21), the solvent content is 44.3% and the tetramers have multiple contacts with their neighbors Crystal packing contacts are numerous across the entire tetra-mer surface and include some weak contacts in the loop region (residues 22–42) The crystal contacts in form 1 leave sufficient room for unhindered packing of the loops in the b-hairpin conformation
In crystal form 2, the contacts are much more sparse, despite having almost the same solvent content (43.6%) as crystal form 1 Two important lattice
Fig 2 Schematic representation of the crystal packing in crystal form 2 Areas in contact are enclosed in the boxes Boxes in broken lines represent symmetry-related contacts to those enclosed by the solid boxes The contact on the left hand side comprises the active site loop (residues 22–42), shown in detail in Figs 3 and 4 At the other side of the tetramer, the active site loops are not in direct lattice contact, resulting in much higher temperature factors Both loops in the upper dimer, regardless of the packing contact, are in a helical conformation, whereas the lower dimer loops are in an extended conformation.
Fig 3 The view of the active site of both superposed TM1415
models (crystals forms 1 and 2) and that of human IMPase (PDB
code 1AWB) The model of the human enzyme (in light gray) has
three metal ions bound (yellow spheres) and the substrate ( D
-inosi-tol-1-phosphate, gray) The model of the TM1415 crystal form 1 is
in purple and the crystal form 2 in green (including the tartrate
molecule) The conformational change in loop 22–42 is indicated by
green arrows, and the change in the 60s loop harboring Glu65–66
directly co-ordinating metal ions, is shown in red arrows The
con-tact of the active site loop (22–42) in the helical (in green, crystal
form 2), as well as in the extended conformation (in purple, crystal
form 1), to the symmetry mate in extended conformation is marked
by a blue arrow.
Trang 5contacts occur around the loop region (residues 22–42).
The loops on one side of the tetramer are in direct and
intimate lattice contact (two direct hydrogen bonds),
whereas the loops on the other side of the tetramer are
practically unhindered, without direct contact (Fig 2) Even though the crystal packing in both forms is dif-ferent, in form 2 there is still sufficient space around the loops so that the lattice could accommodate the tetramer with all loops in b-hairpin conformation,with-out significant structural changes (Fig 3)
Active site loops The direct comparison of both crystal forms provides unexpected insights into the principles of protein design and shows an unusual structural plasticity The tetramer in crystal form 1 (P21) is very symmetrical (the rmsds between individual subunits are listed in Table 2), whereas the tetramer in the crystal form 2 is very asymmetrical In the following discussion, we use the nomenclature suggested in Fig 4B, which identifies the upper and lower dimers in the tetrameric structure
In crystal form 2, the lower dimer has the active site loops in the b-hairpin conformation, whereas in the upper dimer the loops are folded into two short a-heli-ces (Figs 3 and 4) The color brackets in Fig 4 indicate the same fragment folded in different confor-mations in lower and upper dimers
Despite lacking any significant contacts, loops in the upper and lower dimers of crystal form 2 have distinct and different conformations (Fig 4) The loop (resi-dues 62–72) shows significantly changed architecture from a more extended conformation (b-sheet in form 1) to the more coiled conformation in form 2 The act-ive site loop (residues 22–42), and the loop (residues 62–72) in TM1415 are required for the formation of the active site in IMPase and FBPase [8,10] Figure 3 shows the superposition of both crystal forms of TM1415 and the human IMPase with a full comple-ment of metal ions and the substrate The structures superpose well at the active site region and the figure shows the change in conformations of those two active site loops (green and red arrows) Both loops harbor the residues involved in metal ion binding and there-fore the subunits with alternative loop conformation would be incapable of binding the full set of metal ions Additionally, residue Asp44, which plays a cru-cial role in the catalytic mechanism (creation of the nucleophile) in both upper subunits, has an alternative conformation in which it loses a direct contact to Thr84 Oc that is critical for water activation All of these conformational changes make the upper dimer catalytically incompetent
The catalytic loops in crystal form 1 have tempera-ture factors slightly higher than, but comparable with, the rest of the structure (Table 1) The stability of the loops is confirmed with the quality of the electron
A
B
Arg24B
α
β
Arg24B
Asp42B Asp42B
Lys31B Lys31B
Lys30C
Arg24C Arg24C
Lys30C
Fig 4 (A) The stereo-diagram of the active site loop (residues 22–
42) in contact with the same sequence symmetry-related fragment
(residues 22–42) covered with the sigma-weighted 2Fo-Fc electron
density, contoured at the 1.1 r level The helical (residues 22–42)
fragment (blue model) is covered with the purple map, whereas
the symmetry-related 22–42 fragment (purple model) is covered
with a yellow map The blue and red brackets denote the same
sequence in both models (B) Comparison of both crystal forms.
The crystal form 1 is in purple and the crystal form 2 is in green.
Please note significant displacement of residues 22–42 (loop 1) and
62–72 (loop 2) in the upper dimer The fragments enclosed in
boxes (with colors corresponding to the colors of the electron
den-sity maps in (A) are in contact in the crystal form 2, as presented
above.
Trang 6density (Fig 4 and supplementary Fig S1) The
tem-perature factors for the loops in direct contact in
crys-tal form 2 (one in b- the second in a helical
conformation) are slightly higher than, but comparable
to, the rest of the structure; the remaining two loops have substantially higher temperature factors (supple-mentary Fig S4) and much weaker electron densities The symmetrical crystal form 1 has a single metal ion bound at the active site This metal contributes to the stabilization of active site architecture Choe et al [10] concluded that this particular metal ion-binding site is the most frequently occupied and has the highest affinity to metal ions in FBPase The metal ion does not make direct contact with either of the two mobile loops In crystal form 2, we found no metal ions, but
a single molecule of tartaric acid in the active site cav-ity This ligand does not interact with any elements of the active site loop Its location is somewhat reminis-cent of the sugar moiety of the substrate (Fig 3) Therefore, it would be difficult to argue that the tar-trate or the metal ion is the cause of the asymmetry The asymmetry must originate from two differently organized dimers present in solution that are dynamic-ally incorporated into the lattice during crystallization (supplementary Fig S5)
Evolutionary link The active site loop sequence (residues 22–42) is parti-ally similar to the human enzyme and partiparti-ally similar
to the sequences of M jannaschii and A fulgidus IMPases (Fig 5) In Fig 5 we present the alignment
of the TM1415 sequence with sequences resulting from the BLAST searches and clustering of all 786 inde-pendent sequences into 13 functional families Every sequence in Fig 5 represents a single protein family that has distinct functionality Figure 5 shows a small fragment of the alignment, including the mobile loop sequences Judging by the clustering of sequences, TM1415 is closer to the human IMPase The mobile loop sequence fits the environment less than other fragments (as measured by psqs, data not shown) The results of servers ranking this fragment propensity for order-disorder (disprot) [22] clearly suggest that this fragment has a tendency to be disordered There-fore, this fragment has evolved to be mobile and less structured
The characteristic element for our sequence is that, when aligned structurally with other members of the family, the fragment has low sequence conservation (Fig 5) It has variable length as well as amino acid content, suggesting that the fragment is rapidly evol-ving Even when crucial positions are preserved, differ-ent residues fulfill the same structural role (Figs 4 and 5) The other fragment (160s loop), predicted to be unstructured (supplementary Fig S4), participates in the assembly of the dimer and also of the tetramer As
Table 2 Comparison of the rmsds between different subunits
within individual crystal forms (off-diagonal terms), as well as
between corresponding subunits of both crystal forms (diagonal
terms) Please note the symmetry of crystal form 1 and asymmetry
of crystal form 2 represented by low and high values of the rmsd,
respectively.
Subunit a
Crystal form 2 (P2 1 2 1 2 1 )
Crystal form 1 (P2 1 ) A 0.931 0.739 3.937 3.335
a
The rmsds were calculated on the 252 Ca positions of individual
subunits.
Table 1 Data collection and refinement summary.
Crystal form
R merge 0.058 (0.41) 0.063 (0.55)
rmsd
Ramachandran plot (%)
Ligands and solvent
Temperature factors (A ˚ )
a Last shell data in parenthesis (2.2–2.27 A ˚ , crystal form 1; 2.4–
2.49 A ˚ , crystal form 2) b Loops in contact ⁄ loops not in contact.
Trang 7presented above, the change in the aggregation state
contributed to a change in enzyme functionality The
inhibition, by Li+, of several members of the family,
must also be considered as an acquisition of a novel
functionality In summary, the low sequence
conserva-tion and high variability of both loops when linked to
their structural instability suggests evolution of novel
functionalities being driven by changes in sequence of
those fragments [15,16,23]
Experimental procedures
Cloning and protein production
The TM1415 protein was expressed in E coli, as described
previously [6] After cell lysis and removal of the cell
debris by centrifugation, the supernatant containing
TM1415 was heated to 85C and the denatured E coli
proteins were removed by centrifugation The enzyme was
further purified by column chromatography on a Sepharose
QFF column The protein was > 96% pure, as measured
by SDS⁄ PAGE
Crystallography
The protein was crystallized by the standing drop vapor
diffusion method Five microlitres of the enzyme, in 50 mm
Tris buffer, pH 7.5, was mixed with 5 lL of the
crystalliza-tion buffer containing 15% (w⁄ v) PEG 4000, 15% (v ⁄ v)
PEG 400, 0.2 m MgSO4, and 50 mm (NH4)2SO4, in 50 mm
cacodylate buffer, pH 8 The crystals appeared in 1 week
and had the morphology of chunky prisms with a lattice
organized by P21symmetry Mixing 5 lL of the enzyme in
50 mm Tris, pH 7.5, with 5 lL of the crystallization buffer
containing 15% (v⁄ v) PEG 400 0.2 m sodium tartrate, and
0.2 m (NH4)2SO4in 50 mm citrate, pH 5.6, resulted in
crys-tals with the morphology of thin plates characterized by the
P212121space group The data were collected to 2.2 A˚
reso-lution for the first crystal form, and to 2.4 A˚ for the second
form, on the RaxisIV++ area detector mounted on the Rigaku rotating anode at the X-ray facility at Rice Univer-sity (Houston, TX, USA) The structure was solved by molecular replacement (molrep), using the model construc-ted from the structures of several IMPases (human, MJ0109 and AF2372) as search probes The sequence of TM1415 shares the highest similarity to human IMPase ( 26% identity) and therefore this molecule was used as a scaffold However, there are three deletions (residues 70s, 160s and 210s), making it a bit shorter Those crucial dele-tions are shared with MJ0109 and AF2372 Therefore, we used those molecules to construct the fragments not corres-ponding well to the human structure The probe model was built from fragments of those proteins with the highest homology to TM1415 The full atom model was used for molecular replacement and later refined, using cns, to a standard R-factor of 0.209 and 0.178, as calculated on all reflections to 2.2 and 2.4 A˚ resolution, respectively, for forms 1 and 2 The data collection and refinement statistics can be found in Table 1
Sequence versus structure analysis
The iterated BLAST search was used to establish the mem-bers of the multifunctional IMPase family The groupings followed the CDD classification of the NCBI (http:// www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=cdd) The seq-uence to 3D structure fit was estimated by the program psqs, developed at the Burnham Institute by A Godzik Predictions of the disorder were performed at the web ser-ver of the disprot (Dunker) [21]
We also carried out a clustering experiment in which we investigated the entire IMPase⁄ FBPase family The PFAM clan ‘inositol polyphosphate 1 phosphatase like superfamily’ includes three PFAM domain families (a) Inositol_P(PF00459), (b) FBPase(PF00316) and (c) FBPase_glpX(PF03320) The Inositol_P family has 65 sequences in its seed alignment, representing 586 proteins; and FBPase and FBPase_glpX each has 14 and 6 seed sequences, representing 233 and 101 proteins
Fig 5 Multisequence alignment of the loop fragments of all the family representatives, including T maritima and Homo sapiens Amino acids implicated in the catalytic mechanism are on a blue background The green and the light blue background mark conserved residues The secondary structure, as calculated by DSSP [26] is marked under the sequences, with red for the a-helix and orange for the b-sheet The figure was prepared using the program, VISSA [27].
Trang 8All these 85 seed sequences were clustered into
sub-families at 25% sequence similarity and one representative
sequence was selected for each subfamily Within each
clus-ter, all the sequences were similar to the representative at
25% similarity or more, but similarities between all the
rep-resentatives of different clusters were below 25% The
clus-tering was performed with program cd-hit [24]
These 85 sequences were clustered into 13 subfamilies
Three families represented singletons, and another 10
sub-families contained 2–22 members Five subsub-families
con-tained proteins with 3D structures deposited in PDB The
average identity within each cluster was 35% Figure 4
shows the alignment of TM1415 (which belongs to the
IMPA1_HUMAN cluster) with representative proteins
from each cluster The initial alignment was made using
clustalw [25] and was edited according to the structural
alignment of five present in the PDB proteins
Acknowledgements
We would like to thank Dr Andrey Bobkov for help
in protein production and gel filtration experiments
This work was supported by the NIH grant
1R01 G64481 (to BS), National Science Foundation
grant MCB-9978250 (to MFR), and Department of
Energy Biosciences DE-FG02–91ER20025 (to MFR)
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Supplementary material
The following supplementary material is available online:
Fig S1 Sigma-weighted 2Fo-Fc electron density, con-toured at the 1.1 r level covering the active site loop (residues 22-42), the active site residues (65-66, 79-84) and the ligands bound
Fig S2 Ribbon representation of a single monomer of the TM1415 (left) and the pig FBPase (right)
Fig S3 Temperature factor plots for both crystal forms
Fig S4 Diagram representing the disorder-score, as calculated by the program disprot (Dunker) [22] Fig S5 The chromatogram obtained from gel filtra-tion experiments carried out in citrate buffer (pH 5.6)
on a Superdex 200 column
This material is available as part of the online article from http://www.blackwell-synergy.com
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