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The E296V and M298Q mutations gave an increased intrinsic amidolytic activity about two- and 3.5-fold, respectively compared with wild-type FVIIa.. Compared with wild-type FVIIa, the Ca2

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Assignment of molecular properties of a superactive coagulation factor VIIa variant to individual amino acid changes

Egon Persson1and Ole H Olsen2

1

Haemostasis Biology and2Medicinal Chemistry Research IV, Novo Nordisk A/S, Ma˚løv, Denmark

The most active factor VIIa (FVIIa) variants identified to

date carry concurrent substitutions at positions 158, 296and

298 with the intention of generating a thrombin-mimicking

motif, optionally combined with additional replacements

within the protease domain [Persson, E., Kjalke, M &

Olsen, O H (2001) Proc Natl Acad Sci USA 98, 13583–

13588] Here we have characterized variants of FVIIa

mutated at one or two of these positions to assess the relative

importance of the individual replacements The E296V and

M298Q mutations gave an increased intrinsic amidolytic

activity (about two- and 3.5-fold, respectively) compared

with wild-type FVIIa An additive effect was observed upon

their combination, resulting in the amidolytic activity of

E296V/M298Q-FVIIa being close to that of the triple

mutant The level of amidolytic activity of a variant was

correlated with the rate of inhibition by antithrombin (AT)

Compared with wild-type FVIIa, the Ca2+dependence of

the intrinsic amidolytic activity was significantly attenuated

upon introduction of the E296V mutation, but the effect was

most pronounced in the triple mutant Enhancement of the proteolytic activity requires substitution of Gln for Met298 The simultaneous presence of the V158D, E296V and M298Q mutations gives the highest intrinsic activity and is essential to achieve a dramatically higher relative increase in the proteolytic activity than that in the amidolytic activity The N-terminal Ile153 is most efficiently buried in V158D/ E296V/M298Q-FVIIa, but is less available for chemical modification also in the presence of the E296V or M298Q mutation alone In summary, E296V and M298Q enhance the amidolytic activity and facilitate salt bridge formation between the N-terminus and Asp343, E296V reduces the

Ca2+dependence, M298Q is required for increased factor X (FX) activation, and the simultaneous presence of the V158D, E296V and M298Q mutations gives the most pro-found effect on all these parameters

Keywords: factor VIIa variant; factor X activation; intrinsic activity; superactivity; zymogenicity

Coagulation factor VIIa (FVIIa), in contrast to other,

homologous serine proteases, possesses an active

confor-mation that is energetically unfavourable The consequence

is a far from optimal enzymatic activity of free FVIIa, which

is dramatically enhanced upon binding to the cognate,

membrane-bound cofactor tissue factor (TF) or to its

extracellular, soluble portion (sTF) [1] In the natural

environment, the zymogenicity of free FVIIa ensures timely

triggering and appropriate location of FVIIa haemostatic

activity upon vascular lesion and concomitant TF exposure

The three-dimensional structure of the protease domain

of free FVIIa is, apart from certain loop regions, virtually

identical to that of thrombin and other constitutively active

and homologous serine proteases [2,3] In addition, the

structural differences between free [3–5] and TF-bound

FVIIa [6,7] are subtle; thus the details in molecular

architecture that restrict the activity of free FVIIa remain

elusive However, the high degree of similarity may be due

to the presence of an active site inhibitor in the structure of the free FVIIa The crystal (or solution) structure of noninhibited FVIIa is presumably needed to reveal the structural differences between latent (zymogen-like) and

active FVIIa However, information possibly pertaining to the latent conformation of free FVIIa has been obtained from the crystal structure of zymogen FVII [8] This structure suggests that relative b strand movements and a hydrogen bond involving Glu296{154} (chymotrypsinogen numbering is given in curly brackets to facilitate compar-isons with homologous enzymes) regulate the activity state

of FVIIa

Recent advances in our understanding of the mechanisms regulating the activity of FVIIa have pinpointed side chains that function as zymogenicity determinants in the free enzyme Replacements of these amino acid residues have resulted in FVIIa molecules with improved intrinsic (TF-independent) catalytic efficiency [9–11] The relatively high intrinsic activity of some of these FVIIa variants suggests that the zymogen-like conformation of free factor VIIa is dictated by a limited number of key amino acid residues We have previously shown that one of these superactive FVIIa variants, containing the mutations V158{21}D, E296{154}V and M298{156}Q, exhibits several properties resembling TF-bound rather than free FVIIa [9] Apart from increased intrinsic enzymatic activity and inhibitor susceptibility as compared with wild-type FVIIa, this mutant has a diminished requirement for calcium ions and a more deeply buried protease domain N-terminus

Correspondence to E Persson, Haemostasis Biology, Novo Nordisk

A/S, Novo Nordisk Park, DK-2760 Ma˚løv, Denmark.

Fax: + 45 44434417, Tel.: + 45 44434351,

E-mail: egpe@novonordisk.com

Abbreviations: FVIIa, coagulation factor VIIa; FX, coagulation factor

X; sTF, soluble tissue factor (residues 1–219); TF, tissue factor;

AT, antithrombin (III).

(Received 20 June 2002, revised 2 October 2002,

accepted 22 October 2002)

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(Ile153{16}) indicating salt bridge formation of this residue

with Asp343 {194} To pinpoint the underlying mutation(s)

responsible for these molecular and functional properties of

the triple mutant, and thereby gain more knowledge about

the zymogenicity determinants of FVIIa, mutants with

substitutions at one or two of positions 158{21}, 296{154}

and 298{156} were expressed and characterized

M A T E R I A L S A N D M E T H O D S

Proteins, chemical reagents and standard methods

Wild-type FVIIa [12] and sTF [13] were prepared according

to published procedures The concentrations of FVIIa and

sTF were determined by ELISA and spectrophotometry,

respectively, as described [9] SDS/PAGE was run on

8–25% gradient gels using the PhastSystem (Amersham

Pharmacia) and followed by silver staining to check the

purity of the FVIIa mutants and to verify their conversion

to the activated, two-chain form Factor X (FX) and factor

Xa were from Enzyme Research Laboratories (South Bend,

IN, USA) and antithrombin (AT) from Hematologic

Technologies (Essex Junction, VT, USA) Unfractionated

heparin was from Leo Pharmaceutical Products (Ballerup,

Denmark), potassium cyanate (KOCN) from Merck and

the chromogenic substrates S-2288 (D

-Ile-Pro-Arg-p-nitro-anilide) and S-2765 (benzyloxycarbonyl-D

-Arg-Gly-Arg-p-nitroanilide) from Chromogenix (Mo¨lndal, Sweden)

Mutagenesis and preparation of FVIIa mutants

The FVII expression plasmid pLN174 [14] was used as the

template for site-directed mutagenesis using the

Quik-Change kit (Stratagene, La Jolla, CA, USA) The primer

(only sense primer is given) used to introduce the E296V

mutation, with base substitution in italic and the affected

codon underlined, was GCC ACG GCC CTG GTG CTC

ATG GTC CTC The primers used to introduce the V158D,

E296V/M298Q and M298Q mutations have been described

[9] Plasmid preparation, baby hamster kidney cell

trans-fection and selection, and the expression, purification and

autoactivation of FVII mutants were carried out as

described [9,15] The presence of none but the desired

mutation(s) was verified by sequencing the portion of the

cDNA encoding residues  80–406, encompassing the

second epidermal growth factor-like and serine protease

domains, on a MegaBACE 1000 (Amersham Pharmacia

Biotech)

Activity and inhibition assays

The enzymatic activity and inhibition rates of the FVIIa

variants were measured as described [9] using an assay

buffer containing 50 mMHepes, 0.1MNaCl, 5 mMCaCl2

and 1 mgÆmL)1bovine serum albumin (pH 7.4) Briefly, the

amidolytic activity was measured by mixing 180 lL

wild-type or mutant FVIIa alone (final concentration 100 nM) or

180 lL FVIIa together with sTF (final concentrations

10 nMFVIIa and 50 nMsTF) with 20 lL 10 mMS-2288 at

25C The measurement with free FVIIa was also

per-formed in an assay buffer where CaCl2 was replaced by

EDTA The ability of the FVIIa variants to activate FX (the

proteolytic activity) was studied by incubating 10 n

(M298Q-, V158D/M298Q-, E296V/M298Q- and V158D/ E296V/M298Q-FVIIa) or 50 nM (wild-type, V158D-, E296V-, and V158D/E296V-FVIIa) FVIIa variant alone

or 5 nM FVIIa variant plus 100 nM sTF with various concentrations of FX (0.1–4.8 lM) for 20 min at ambient temperature (22 ± 1C) Buffer containing S-2765 was then added to give a chromogenic substrate concentration

of 0.5 mM, whereafter the factor Xa-catalyzed hydrolysis was measured for 2 min The inherent activity of the FX substrate and of the FVIIa/sTF mixture were subtracted and the net amount of factor Xa generated was derived from a standard curve The kinetic parameters of FX activation were calculated using GRAFIT 4.06(Erithacus Software, Ltd) The rates of inhibition by AT/heparin and potassium cyanate were studied according to published methods [9] by incubation of the FVIIa variants (100 nM with AT and 1 lMwith cyanate) with the inhibitor for 15 and 60 min, respectively, followed by measurements of the residual amidolytic activity Bovine serum albumin was omitted from the buffer during the incubation with cyanate

R E S U L T S

Enzymatic activity of FVIIa variants Two forms of enzymatic activity are analyzed The amido-lytic activity is measured to assess the functional status of the active site, whereas the proteolytic activity reflects both this and exosite alterations resulting in further increased macromolecular substrate turnover In the absence of TF, V158D/E296V/M298Q-FVIIa has seven- to eight-fold higher intrinsic amidolytic activity compared with wild-type FVIIa as measured by the rate of hydrolysis of the chromogenic substrate S-2288 [9] When the mutations were introduced individually into FVIIa, V158D had no significant effect on the amidolytic activity, whereas E296V and M298Q yielded approximately two- and 3.5-fold enhancement, respectively (Table 1) The result with M298Q-FVIIa agrees with earlier reports [9,10] The double mutant E296V/M298Q-FVIIa had an amidolytic activity six times higher than that of wild-type FVIIa and close to that of V158D/E296V/M298Q-FVIIa In addition, V158D/ E296V-FVIIa had significantly lower amidolytic than E296V-FVIIa and V158D/M298Q-FVIIa had similar or slightly lower activity than M298Q-FVIIa This shows that the simultaneous presence of the E296V and M298Q mutations suffices to achieve an amidolytic activity similar

Table 1 Enzymatic activity of free FVIIa variants All values are means ± SD (n ¼ 3) The amidolytic activity is given as the ratio between the activity of mutant and wild-type FVIIa.

FVIIa variant

Amidolytic activity (mutant/wt)

FX activation (k cat , · 10)3s)1)

V158D/E296V/M298Q 7.6 ± 0.5 2.2 ± 0.3

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to that of the triple mutant and that the substitution of Asp

for Val at position 158 has an insignificant or negative

impact on the amidolytic activity In complex with sTF,

none of the investigated mutants had an amidolytic activity

significantly different from that of wild-type FVIIa (not

shown)

The amidolytic activity of free FVIIa has been shown to

be at least about 10 times higher in the presence of 5 mM

Ca2+ than in the absence of the metal ion [16,17] As

expected, in the absence of Ca2+wild-type FVIIa exhibited

an amidolytic activity corresponding to about one tenth of

its activity in the presence of 5 mMCa2+ This was also the

case for V158D-FVIIa, M298Q-FVIIa and

V158D/M298Q-FVIIa In contrast, all FVIIa variants containing the E296V

mutation retained a larger fraction of their activity when

Ca2+ was omitted from the assay buffer; E296V-FVIIa

(retained 24% of the activity), V158D/E296V-FVIIa (29%),

E296V/M298Q-FVIIa (39%) and, in particular, V158D/

E296V/M298Q-FVIIa (64%) This shows that the

substitu-tion of Val for Glu296{154}, which contacts the acidic Ca2+

binding loop in the protease domain, attenuates the Ca2+

dependence of FVIIa and confirms that this replacement is

responsible for the diminished Ca2+requirement observed

for V158D/E296V/M298Q-FVIIa [9] The additional

sub-stitution of Gln for Met298{156}, especially in combination

with the replacement of Val158{21} by Asp, further

attenuates the Ca2+dependence

We have previously shown that, in the absence of TF, the

kcatvalues for FX activation by M298Q-FVIIa and V158D/

E296V/M298Q-FVIIa were increased 5.5- and 28-fold

compared with that of wild-type FVIIa, respectively [9] In

agreement with these results, the new batches of the two

variants displayed seven- and 25-fold higher values,

respect-ively (Table 1) E296V/M298Q-FVIIa and

V158D/M298Q-FVIIa activated FX five to seven times more rapidly than

did wild-type FVIIa, rates similar to that seen with

M298Q-FVIIa This indicates that the introduction of the V158D or

E296V mutation on the M298Q-FVIIa background does

not contribute to an increased proteolytic activity Indeed,

an increased rate of FX activation was only observed for the

FVIIa variants containing the M298Q mutation, and

V158D-FVIIa, E296V-FVIIa and V158D/E296V-FVIIa

exhibited a rate of catalysis of FX activation similar to or

slightly below that of wild-type FVIIa It is noteworthy that

FX activation occurs much faster when catalyzed by

V158D/E296V/M298Q-FVIIa than when catalyzed by

V158D/E296V-FVIIa, V158D/M298Q-FVIIa or E296V/

M298Q-FVIIa This suggests that the triad composed of

residues 158{21}, 296{154} and 298{156} works as a unit

regulating macromolecular substrate processing by free

FVIIa All FVIIa variants (including the wild-type enzyme)

gave Kmvalues for FX between 2.2 and 2.8 lMindicating

that the mutations did not affect substrate affinity to a

detectable extent (data not shown) When bound to sTF,

none of the studied FVIIa variants exhibited an increased

ability to activate FX as compared with wild-type FVIIa

(not shown)

Inhibition of FVIIa variants by antithrombin

and potassium cyanate

The susceptibility of the FVIIa variants to inhibition by

two mechanistically different agents, antithrombin (active

site-directed) and potassium cyanate (N-terminal carbamy-lation), was investigated The rate of inhibition by anti-thrombin reflects the reactivity of the active site and has previously been found to nicely correlate to the level of amidolytic activity of FVIIa variants [9] The results herein show that the new variants also obey this rule, with a strong relationship between amidolytic activity enhancement and increased inhibition rate (Table 2) The inhibition resulting from potassium cyanate-mediated, N-terminal carbamyla-tion reflects the degree of exposure of the protease domain N-terminus When compared with that of wild-type FVIIa, the susceptibility to carbamylation was found to be strikingly reduced for V158D/E296V/M298Q-FVIIa (and reduced to some extent also for M298Q-FVIIa) indicative of

a more buried N-terminal amino group [9] A majority

of the present FVIIa variants exhibits an intermediate level

of protection from carbamylation (Table 2) E296V-FVIIa retains about half of its activity after incubation with potassium cyanate, which is slightly more than wild-type FVIIa V158D/E296V-FVIIa, V158D/M298Q-FVIIa and E296V/M298Q-FVIIa all retain about 60% of their activity, which is similar to the residual activity of M298Q-FVIIa but considerably less than that of V158D/E296V/M298Q-FVIIa This indicates that no single mutation is particularly efficient in terms of promoting the insertion of the N-terminus and, importantly, demonstrates that all three mutations are needed for stable burial of the N-terminus, most likely through salt bridge formation with Asp343{194})

D I S C U S S I O N

V158D/E296V/M298Q-FVIIa has been found to possess unique properties that differ dramatically from those of wild-type FVIIa (Fig 1) This includes an increased intrinsic activity, a reduced activity dependence on Ca2+ and a buried protease domain N-terminus [9] The characteriza-tion of FVIIa variants containing one or two of the mutations at positions 158{21}, 296{154} and 298{156} has enabled the identification of the amino acid changes mainly responsible for the unique profile of the triple mutant M298Q is the single mutation that enhances the amidolytic activity to the largest extent The E296V mutation, on the other hand, appears to be responsible for the decreased calcium ion dependence of the amidolytic activity, with the other two mutations functioning as modulators of this

Table 2 Inhibitor susceptibility of free FVIIa variants The residual activity (%) after incubation with the inhibitor for 15 min (anti-thrombin) and 60 min (KNCO) is given (means ± SD, n ¼ 3).

FVIIa variant

Inhibitor

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property in the presence of valine at position 296 It is

possible that the increased activity of FVIIa after Ca2+

binding to the acidic 210–220 {70–80} loop [18] is induced,

at least to some extent, by a conformational change

resulting from charge neutralization The altered local

charge distribution upon replacement of Glu296by Val

might in part mimic this effect and contribute to an

increased activity and reduce the positive effect of Ca2+

binding (Fig 1A) The relative intrinsic proteolytic activity,

i.e the degree of enhanced catalysis of FX activation,

follows a pattern slightly different from that of the

amidolytic activity The M298Q mutation, in contrast to

V158D and E296V, enhances the proteolytic activity and is

indeed present in all members of this family of FVIIa

variants with increased proteolytic activity Moreover,

V158D/E296V/M298Q-FVIIa is far superior to the other

variants, indicating that the three mutations work together

in a concerted fashion to dramatically boost the proteolytic

activity The fact that FX itself binds Ca2+precludes direct

studies of the influence of Ca2+on the proteolytic activity

An intriguing property of V158D/E296V/M298Q-FVIIa is the nonparallel increase in amidolytic and proteolytic activity compared with wild-type FVIIa Such a behaviour, but less pronounced, is also observed for M298Q- and V158D/M298Q-FVIIa This demonstrates that the three mutations together, and to some extent the M298Q mutation alone, somehow result in an additional facilitation

of macromolecular substrate processing on top of the activity increase detected with a low-molecular-mass, chromogenic substrate The V158D and E296V mutations need to be present simultaneously to achieve a proteolytic activity higher than that observed with M298Q-FVIIa This indicates that local net charge and charge distribution are critical, presumably in order to allow for a stable local conformation to involve in an exosite interaction with FX

A recent study has clearly shown that the charge on residue

158 is pivotal for enhanced FX activation [19] The relative rate of hydrolysis of peptides of various lengths (from

Fig 1 Activation pocket region of FVIIa (A) The carbon atoms of the N-terminal residues 153{16} to 158{21} are shown in green, those of b strand B2 in the active FVIIa conformation (residues 296{154} to 305{163}) in gray and in the zymogen or inactive conformation (residues 296{154} to 302{160}) in magenta, and the Ca2+binding loop (residues 210{70} to 220{80}) is shown as a gray ribbon with the Ca2+ion represented by a magenta sphere The residues in position 158{21} and in positions 296{154} and 298{156} in the active B2 conformation are those found in V158D/ E296V/M298Q-FVIIa The water molecule interacting with the backbone carbonyl of Ile153{16}, the backbone amides of residues 155{18} and 156{19} and the side chain of Gln298{156} is shown as a red sphere (B and C) Detail of the activation pocket in V158D/E296V/M298Q-FVIIa and wild-type FVIIa, respectively The structure is from the FVIIa-TF complex (6, PDB entry code 1dan), except for the zymogen conformation of strand B2 which is from the structure of FVII (8, PDB entry code 1jbu) The drawings were made using QUANTA 2000 (Accelrys Inc.).

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P4-P1¢ to P4-P7¢ of FX) by V158D/E296V/M298Q-FVIIa

as compared with that of wild-type FVIIa was constant,

indicative of that the three mutations do not simply increase

the accessibility of the substrate binding cleft to longer

substrates (E Persson, A M Hansen, K Madsen and O

H Olsen, unpublished observation) However, the peptides

may not correctly mimic the corresponding sequences when

part of FX Finally, the high proteolytic activity of V158D/

E296V/M298Q-FVIIa appears to be accompanied by a

stabilized salt bridge between Ile153{16} and Asp343{194}

Crystallographic data and molecular dynamics

simula-tions of FVII suggest that the purpose of the activation to

FVIIa is to maturate and open the substrate binding site, in

particular the S1 pocket, whereas an appropriate catalytic

triad geometry appears to be preformed in the zymogen

[8,20] However, even after conversion to FVIIa the

conformational equilibrium appears to be shifted toward

an enzymatically latent form Thus, the role of TF, apart

from localizing FVIIa to the site of vascular injury,

optimally positioning the active site [21] and contributing

to an extended, specificity-determining, factor IX/X binding

surface [22–24], is to stabilize the active FVIIa

conforma-tion Strong evidence supports that Met306in FVIIa is the

starting point for the TF-mediated effect on the FVIIa

conformation leading to allosteric stimulation of the

enzymatic activity [6,15,25,26] Recently, site-directed

muta-genesis on FVIIa has been able to mimic the effect of TF

binding, at least in part, resulting in FVIIa molecules with

enhanced intrinsic activity [9–11,19] Two published

hypo-theses accommodate an instrumental role of the activation

region in the regulation of the activity of free FVIIa, the first

dealing with the structural requirements for FVIIa to be in

an active conformation [8], whereas the other tries to explain

the effects of the activity-enhancing mutations [9] They are

complementary and contribute to our understanding of

how the activity-enhancing mutations in this region of

FVIIa might exert their influence on the enzymatic activity

Replacement of Met298{156} by Gln could prevent relative

b strand movement and stabilize strand B2 in a position

compatible with an active FVIIa conformation (Fig 1A)

This is accomplished by introducing an extra hydrogen

bond to the water molecule that interacts only with residues

155{18} and 156{19} in wild-type FVIIa (Fig 1B,C)

Substitution of Asp for Val at position 158{21} would not

be expected to affect the activity of FVIIa unless Gln is

simultaneously present at position 298{156} to allow the

establishment of a hydrogen bond between the two

introduced side chains that in turn stabilizes the inserted

N-terminus (Fig 1B) An effect of the V158D mutation

becomes evident only after simultaneous replacement of

Glu296by Val, presumably due to electrostatic repulsion

between Asp at position 158 and Glu at position 296 In

addition, according to the structure of zymogen FVII [8],

the change at position 296{154} (Glu to Val) eliminates

hydrogen bonds between the Glu side chain and the

backbone carbonyls of residues 158{21} and 159{22} This

would remove an obstacle for the formation of a salt bridge

between the N-terminal residue 153{16} and Asp343{194}

as well as for the b strand reregistration that appears to be

required for FVIIa to attain its active conformation

Together, the three mutations result in a highly active

FVIIa molecule that is more comfortable in the active b

strand registration and with a buried N-terminus

Moreover, the mentioned b strand B2 and the preceding loop contain Glu296{154} and Arg290{147} which have been shown to be important for FX activation [25,27] This might explain why an ordering of this region selectively increases the proteolytic activity more than the amidolytic activity In accordance with this, displacement of this region

by a peptide exosite inhibitor causes a larger effect on the proteolytic activity of FVIIa than on its amidolytic activity [5]

A C K N O W L E D G E M E N T

We thank Anette Østergaard and Helle Bak for excellent technical assistance.

R E F E R E N C E S

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