The heavy chain ETNF-6-H of the mAb was considered to possess a catalytic triad-like structure in the complementarity determining regions CDRs.. Abbreviations CDR, complementarity determ
Trang 1antibody heavy chain
Emi Hifumi1,2, Kyohei Higashi3and Taizo Uda2,3
1 Research Center for Applied Medical Engineering, Oita University, Japan
2 CREST of JST (Japan Science and Technology Corporation), Kawaguchi, Saitama, Japan
3 Faculty of Engineering, Oita University, Japan
Introduction
This decade has seen the preparation of many natural
catalytic antibodies The first natural catalytic
anti-body isolated from the serum of an asthma patient
was reported by Paul et al [1] The catalytic antibody
could enzymatically cleave vasoactive intestinal peptide
(VIP) Gabibov and colleagues [2] and Nevinsky and
colleagues [3] found antibodies showing catalytic
activ-ity capable of cleaving DNA The two former catalytic
antibodies were prepared from samples of humoral
serum from individuals with autoimmune diseases (e.g
systemic lupus erythematosus) and the latter from
human milk A natural catalytic antibody produced in
the serum of patients with hemophilia A reported by
Kaveri and colleagues [4] was unique because it
enzy-matically decomposed the molecule of factor VIII,
indicating some pathological roles of catalytic
antibod-ies in vivo These antibodantibod-ies exhibited catalytic activity
in the form of the whole antibody In contrast, Bence-Jones protein, which is secreted in the urine of patients with certain diseases, particularly multiple myeloma, is well known to be a human light chain of the antibody Matsuura et al [5], Matsuura & Sinohara [6] and Paul
et al [7] found that Bence-Jones proteins could have peptidase activity These reports revealed that some antibodies and⁄ or the light chains naturally produced
in the patients could have catalytic activity, but their antigens are unknown From the standpoint of new approaches to generate or characterize a catalytic anti-body, Gololobov et al [8] reported a unique catalytic antibody cleaving gp120 of HIV, using a covalently reactive analog method Ponomarenko et al [9] made
a catalytic anti-idiotype antibody, and examined the
Keywords
catalytic antibody; cytokine; proteolysis;
TNF-a
Correspondence
T Uda, Oita University, Faculty of
Engineering, 700 Dannoharu, Oita-shi, Oita
870-1192, Japan
Fax: +81 97 554 7892
Tel: +81 97 554 7892
E-mail: uda@cc.oita-u.ac.jp
(Received 10 April 2010, revised 19 June
2010, accepted 21 July 2010)
doi:10.1111/j.1742-4658.2010.07785.x
It has long been an important task to prepare a catalytic antibody capable
of digesting a targeting crucial protein that controls specific life functions Tumor necrosis factor-a (TNF-a) is a cytokine and an important molecule concerned with autoimmune diseases such as rheumatoid arthritis, chronic obstructive pulmonary disease, and Crohn’s disease A mAb (ETNF-6 mAb) raised against human TNF-a was prepared, and the steric conforma-tion was created by using molecular modeling after the cDNA was sequenced The heavy chain (ETNF-6-H) of the mAb was considered to possess a catalytic triad-like structure in the complementarity determining regions (CDRs) As a result, ETNF-6-H exhibited a peptidase and a prote-ase activity In fact, ETNF-6-H predominantly cleaved the Ser5-Arg6 bond
of TNF-a at the first step, resulting in the generation of a fragment of
17 kDa This fragment was digested to a smaller molecule of 15 kDa by scission of the Gln21-Ala22 bond The intermediate product was further converted into a fragment of 13.3 kDa by successive cleavage of the Leu36-Leu37 and Asn39-Gly40 bonds The heavy chain possessed a protease activ-ity against TNF-a with a multicleavage site
Abbreviations
CDR, complementarity determining region; ETNF-6-H, heavy chain of ETNF-6 mAb; HSA, human serum albumin; hTNF-a, human tumor necrosis factor-a; TNF-a, tumor necrosis factor-a; TNF-b, tumor necrosis factor-b; VIP, vasoactive intestinal peptide.
Trang 2features in detail with the use of several potential
pep-tide substrates
Apart from the natural catalytic antibodies found in
human subjects, Paul and colleagues [10] and Uda and
colleagues [11–14] have succeeded in producing some
catalytic antibodies by immunizing ground-state
poly-peptides or proteins in mice A former catalytic
anti-body could cleave the antigenic peptide VIP with its
antibody light chain [10] In the latter cases, Uda et al
obtained a light chain of 41S-2 mAb cleaving an
HIV-1 env gp4HIV-1 molecule They also succeeded in the
pro-duction of catalytic antibody light and⁄ or heavy chains
capable of the degradation of urease in
Helicobact-er pylori The catalytic antibody light chain, UA15-L,
could suppress the number of bacteria infecting the
mouse stomach In these catalytic antibodies, a unique
structure (catalytic triad-like structure), in which three
amino acids (Asp, Ser, and His) are situated close to
each other, is observed in many antibodies by the use
of molecular modeling These studies suggest the
possi-bility that we can prepare catalytic antibodies capable
of cleaving molecules of interest
Tumor necrosis factor-a (TNF-a) is a crucial
mole-cule as an inflammatory cytokine, and causes severe
diseases such as rheumatoid arthritis, chronic
obstruc-tive pulmonary disease, and Crohn’s disease [15–20]
In this study, we prepared a mAb (ETNF-6 mAb)
raised against human TNF-a by the immunization of
the ground-state molecule into Balb⁄ c mice The heavy
chain isolated from the parent whole antibody showed
the unique catalytic ability to degrade the TNF-a
mol-ecule In this article, the features of the heavy chain
will be described in detail from the immunochemical
and biological points of view
Results
Immunological features of the antibodies
By normal cell fusion [21] after the immunization of
human TNF-a (hTNF-a) into mice, ETNF-6 mAb
binding with hTNF-a was prepared ETNF-6 mAb did
not show any cross-reactivity to other proteins, such
as human serum albumin (HSA), BSA, human IgA,
human IgM, human IgE, human hemoglobin, KLH
and tumor necrosis factor-b (TNF-b) (Fig 1) ETNF-6
mAb possessed very high specificity against hTNF-a
The apparent affinity constants of intact ETNF-6
mAb and its heavy chain were evaluated by using
ELISA From A50 of the ELISA, apparent affinity
constants of ETNF-6 mAb and its heavy chain
for hTNF-a were estimated to be 1.1· 109m)1 and
4.2· 106m, respectively [22]
Sequences and steric conformation of ETNF-6 mAb
Sequencing of the cDNA of the variable region of ETNF-6 mAb was performed, and this was followed
by molecular modeling of its three-dimensional struc-ture The heavy chain of ETNF-6 (ETNF-6-H) seemed
to encode a catalytic triad-like structure in the CDRs The cDNA and amino acid sequences that were deduced are presented in Fig 2A,B Figure 3A shows the three-dimensional structure of the variable region
of ETNF-6-H In the heavy chain, three amino acids, His35, Ser95, and Asp97, are located closely together
in CDR1 and CDR3 The distance between the Ca atoms of His and Ser is 7.17 A˚, and that between the
Ca atoms of His and Asp is 9.87 A˚ In Fig 3B–E, other catalytic triads, composed of Asp1, Ser27e, and His93, which are mostly observed in catalytic light chains such as VIPase [10], ECL2B-2-L [22], i41SL1-2-L [23], HpU-9-L [24], and UA15-L [25], are presented along with that of ETNF-6-H In all cases, it is inter-esting that the three amino acids are located in the CDRs and are positioned closely together In the case
of ECL2B-L, the distance between the Ca atoms of His93 and Ser27e is 7.25 A˚, and that between the Ca atoms of His93 and Asp1 is 12.75 A˚ Among the struc-tures mentioned above, the three amino acids of ETNF-6-H are close to those of ECL2B-2-L
Cleavage assay For a peptide
To avoid contamination, most glassware, plasticware and buffer solutions used in this experiment were ster-ilized as much as possible by heating (180C, 2 h), autoclaving (121 C, 20 min), or filtration through a
0
TNF-α
TNF-β h-IgA h-IgM h-IgE HSA h-Hb BSA KLH
0.2 0.4 0.6 0.8 1 1.2
1.4 1.6 1.8
Fig 1 Results of cross-reactivities of ETNF-6 mAb with irrelevant proteins by ELISA ETNF-6 mAb showed high specificity for hTNF-a The mAb did not react at all with human TNF-b at all.
Trang 30.20-lm sterilized filter The experiments were mostly
performed in a biological safety cabinet, to avoid
airborne contamination
The epitope of TNF-a recognized by ETNF-6 mAb
was not determined In this study, TP41-1 (TPRGPD
RPEGIEEEGGERDRD), which has mostly been used
for monitoring the catalytic activity of the antibody
and⁄ or its subunits [11–14,26], was employed to
inves-tigate whether or not the antibody heavy chain
pos-sesses peptidase activity
An 800-lL volume of a solution containing purified
ETNF-6-H (0.4 lm) and TP41-1 (60 lm) was
incu-bated in 15 mm NaCl⁄ Pi at 25C in a sterilized test
tube RP-HPLC was used to monitor the time course
of the cleavage of TP41-1 As shown inFig 4A,
degra-dation of TP41-1 began about 24 h after ETNF-6-H
and TP41-1 were mixed together After the lag phase,
TP41-1 was rapidly cleaved At about 80 h, the peptide
had completely disappeared, indicating complete
degradation Decomposition of TP41-1 exhibited a
double-phase reaction profile, as mostly observed in
[11–14,26] Without the presence of ETNF-6-H, TP41-1
was not degraded
Figure 4B also shows HPLC chromatograms After
a reaction time of 47.2 h, the amount of TP41-1 at a
retention time of 11 min decreased, because of
frag-mentation The fragment was observed at a retention
time of 13 min (indicated by an arrow) as a small
peak The peak at 13 min is considered to be a
frag-ment cleaved at the Glu14-Gly15 bond of TP41-1,
because the retention time was consistent with that
observed with 41S-2-L [13] and i41-7 subunits [27] At
a reaction time of 66.9 h, the peaks at both 11 and
13 min decreased further Finally, at 78.5 h, TP41-1
and its fragment almost disappeared from the reaction system The intact mAb exhibited no catalytic activity (data not shown)
For human TNF-a
It has already been shown that catalytic antibody subunits assume the preferable conformations in the induction period [13] or in a reaction mixture [28] Once the conformation has been assumed, the catalytic activity becomes stable, showing no induction time [13,22–27] Thus, prior to the cleavage test for hTNF-a, TP41-1 was completely digested by the catalytic reac-tion of ETNF-6-H To determine whether ETNF-6-H can digest intact hTNF-a, 12% gel SDS⁄ PAGE with silver staining was performed to monitor the time course of the cleavage of hTNF-a at 0, 8, 20, 50 and
94 h of incubation (Fig 5A) (In this case, nonreduc-ing conditions were employed, because, when proteins are treated under reducing conditions with 2-mercapto-ethanol at 95C, there is a possibility that protein cleavage will occur, and we wanted to prevent this from happening.) Lanes 1–5 in Fig 5A represent the bands obtained by mixing ETNF-6-H (0.1 lm) and hTNF-a (6.6 lm) during the incubation Lanes 6–10 show the controls As shown in lane 1, some bands were detected at 0 h of incubation A clear and strong band appearing at 17 kDa corresponds to mono-meric hTNF-a The dimono-meric form was observed at 33.6 kDa Two small bands at 19 and 20 kDa might
be ascribed to isomers of hTNF-a or some adducts to the hTNF-a molecule (For these two bands, N-termi-nal amino acid sequencing was performed, but the analysis failed, because the N-terminus might have
Fig 2 Nucleotide sequences of cDNA
and deduced amino acid sequences for
ETNF-6-H (CDR-1, green; CDR-2, pink;
CDR-3, blue).
Trang 4been blocked Therefore, we could not identify the
molecules; see later results regarding N-terminal
sequencing.) At 8 h of incubation (lane 2), the bands
at 19 and 20 kDa had disappeared, and two clear
bands appeared at 15.0 and 13.3 kDa These bands
are thought to be fragments of hTNF-a At 20 h of
incubation (lane 3), a faint band was observed at
30.6 kDa This is considered to be a fragment
gener-ated from a dimer of hTNF-a The strong band at
17 kDa and the two bands at 15.0 and 13.3 kDa
became clearer with incubation At 94 h of
incuba-tion, the band at 15 kDa became faint, suggesting
that the fragment was successively degraded into
smaller molecular fragments, presumably of 13.3 kDa
In contrast, there were no changes with the
incuba-tion times in the controls without ETNF-6-H
(Fig 5A, lanes 6–10)
For myoglobin and BSA
In order to examine substrate specificity, ETNF-6-H
(0.2 lm) was incubated with an irrelevant protein,
myoglobin (0.9 lm), which is of a similar molecular
size as hTNF-a, under conditions identical to those
employed in the above experiment Myoglobin was
hardly cleaved after 74 h of incubation, as shown in
Fig 5B BSA (0.3 lm) was also used for up to 74 h
for a degradation test, but no change occurred
Analysis of the N-terminal sequence
We characterized the cleavage sites of hTNF-a by N-terminal amino acid sequencing of the fragments produced by the cleavage with ETNF-6-H The results are summarized in Table 1 First, we sequenced hTNF-a itself From band 1 at 20 kDa and band 2 at
19 kDa, the sequencing failed, because of the blocking
of the N-terminus by molecules Band 3 at 17 kDa, corresponding to hTNF-a, gave one main and two minor sequences The main band (fragment A in Table 1) was VRSSS, which is consistent with the N-terminal sequence of hTNF-a The two other bands were RSSS (fragment B) and SRTPS (fragment C), which are the sequences of amino acids 2–6 and 5–9 from the N-terminus of hTNF-a This means that the recombinant hTNF-a contains impurities lacking some amino acids near the N-terminus For the reacted sam-ple at 24 h of incubation, the band corresponding to hTNF-a at 17.0 kDa gave two sequences One was a strong signal, RTPSD (fragment D), and the other was weak, SSSRT (fragment E) The former suggests that the cleavage occurred at the bond between Ser5 and Arg6 The latter weak band suggests a cleaved bond between Arg2 and Ser3 A faint band at 15 kDa gave two signals, AEGQL (fragment F) and RTPSD (frag-ment G) The former indicates the scission of the bond between Gln21 and Ala22 The latter means that a
UA15-L
His93
Asp1
Ser27a
Asp99
Ser58
Asp97
Ser95
His3 5
Asp72
Asp102
ETNF-6-H A
B
Fig 3 Three-dimensional structure of the variable region of several catalytic antibodies
as determined by molecular modeling Red: Asp Violet space: His Green: Ser A circle shows the catalytic triad-like structure com-posed of Asp, His, and Ser (A) shows the structure of ETNF-6-H In (B), (C), (D), and (E), there are light chains that possess an identical catalytic triad-like structure com-posed of Asp1 in FR-1, Ser27a in CDR1, and His93 in CDR3 In ETNF-6-H, Ser95 and Asp97 in CDR3 and His35 in CDR1 seem to create a catalytic triad-like structure.
Trang 5short C-terminal peptide (presumably
YLLFAES-GQVYFGIIA at the C-terminus) might be successively
cut from the fragment of Ser5-Arg6, as judged from
the molecular size Band 6 at 13.3 kDa, gave two
sig-nals One was the main signal, LANGV (fragment H),
and the other was a weak signal, GVELR
(frag-ment I) The former suggests that the Leu36-Leu37
bond was digested, and the latter suggests that that the
Asn39-Gly40 bond was digested, which must have
been caused by the successive digestion of hTNF-a or
its fragments Regarding the bands at 15.0 and
13.3 kDa, it is clear that the band at 15.0 kDa faded
with incubation time In contrast, the band at
13.3 kDa became deeper with incubation time It is
plausible that the fragment generated at 15.0 kDa was
converted to the fragment at 13.3 kDa by a successive
reaction
It seems that no changes occurred for the band at
17 kDa during incubation The signal must be
satu-rated, because a large amount of hTNF-a 6.6 lm was
added to the reaction system, and SDS⁄ PAGE with
silver staining was performed At 33.6 kDa (dimeric form of hTNF-a), the band became faint as incubation time increased, indicating digestion of hTNF-a
0
78.5 h
A
80
60
40
20
0
Reaction time (h)
72 96 120 B
Fig 4 Peptidase activity test of ETNF-6-H TP41-1, 60 l M ;
ETNF-6-H, 0.4 l M The reaction was conducted at 25 C in 15 m M
phos-phate buffer (pH 6.5) (A); (s) Curve for degradation of TP41-1 by
ETNF-6-H (h) Time course of TP41-1 peptide without ETNF-6-H, as
a control Degradation of TP41-1 by ETNF-6-H advanced after a
short induction time (indicating a double-phase reaction profile).
TP41-1 was quickly cleaved by ETNF-6-H after a reaction time of
about 24 h, as shown in (B) by a small fragmented peak at a
reten-tion time of 13 min Finally, at about 80 h, TP41-1 disappeared from
the reaction system Intact ETNF-6 mAb exhibited no catalytic
activ-ity (data not shown).
A
B
Fig 5 Assay for cleavage of hTNF-a by ETNF-6-H The reaction was conducted at 25 C in 15 m M phosphate buffer (pH 6.5) (A) For hTNF-a: hTNF-a, 6.6 l M ; ETNF-6-H, 0.1 l M Lanes 1, 2, 3, 4, and 5: 0, 8, 20, 50 and 94 h of incubation, respectively, after mixing
of hTNF-a and ETNF-6-H Lanes 6, 7, 8, 9, and 10: 0, 8, 20, 50 and
94 h of incubation, respectively, of hTNF-a without ETNF-6-H (control) (B) For Myoglobin: myoglobin, 0.9 l M ; ETNF-6-H, 0.2 l M
A clear, strong band appearing at 17.0 kDa corresponds to mono-meric hTNF-a The dimono-meric form was observed at 33.6 kDa Two small bands at 19 and 20 kDa might be ascribed to isomers of hTNF-a or some adducts to the hTNF-a molecule After 8 h of incu-bation, the bands at 19 and 29 kDa had disappeared, and two clear bands appeared at 15.0 and 13.3 kDa These bands are thought to
be fragments of hTNF-a After 20 h of incubation, a faint band was observed at 30.6 kDa, which is thought to be a fragment generated from a dimer of hTNF-a The band and the two bands below hTNF-a became clearer as incubation time increased After 94 h of incu-bation, the band at 15.0 kDa became faint, suggesting that the fragment was successively degraded into smaller fragments In contrast, there were no changes at any incubation time in the controls without ETNF-6-H.
Trang 6It is well known that the active sites of serine proteases
such as trypsin, chymotrypsin and thrombin are
com-posed of Ser, His and Asp residues, whose sites are
referred to as catalytic triads We have already pointed
out the high probability of obtaining a catalytic
anti-body light (or heavy) chain by the immunization of a
ground-state peptide if a catalytic triad composed of
Asp, Ser and His is generated in the antibody structure
[23,26] In this study, we produced a mAb (ETNF-6
mAb) against human TNF-a As shown in Fig 2A,
ETNF-6-H seems to form a catalytic triad composed
of Asp97, Ser95, and His35 On the topic of antibody
light chains, VIPases (Asp1 in FR-1, Ser27a in CDR1,
and His93 in CDR3) cleaving antigenic VIP have been
reported [28] Uda and colleagues [23] have also found
several catalytic antibody light chains, such as
i41SL1-2-L for antigenic peptide RSSKSLLYSNGNTYLY,
ECL2B-2-L for the chemokine receptor of CCR-5 [22],
and UA15-L for H pylori urease [24], which are light
chains possessing a catalytic triad at the identical
posi-tions of Asp1, Ser27a, and His93 Kolesnikov et al
[29] reported that a dyad composed of His and Ser is
the active site for the hydrolysis of esters in their
anti-idiotypic antibody catalyst Note that His plays an
important role in generating hydrolysis Several reports
on catalytic heavy chains have been published
[12,23,26] We considered that a similar catalytic
triad-like structure as seen in the light chains described
above might be generated in the CDRs of ETNF-6-H,
resulting in hydrolytic activity
Up to now, we have used a peptide, TP41-1, to
monitor the peptidase activity of catalytic antibodies
[13,23,25,26,30], because the peptide is highly soluble
and not bound to the wall of the reaction vessel, in addition to showing very little degradation in the phos-phate buffer In this study, the peptide was degraded
by ETNF-6-H within about 80 h of incubation A lag phase that occurred within 24 h of incubation was also observed in this case This phase is seen in many cleav-age reactions with natural catalytic antibodies [11– 14,23,26] This sort of lag phase was also observed in proteolysis with an anti-idiotypic antibody [31] In the lag phase, it is considered that conformational changes
of catalytic antibody subunits must take place, result-ing in the active form of the antibody subunit generat-ing a multimeric form [13]
Recombinant human hTNF-a was gradually degraded by ETNF-6-H during 94 h of incubation The cleavage sites, which were confirmed by N-termi-nal amino acid sequencing, are indicated by red arrows
in Fig 6 The commercially available recombinant hTNF-a used in this study contained a small amount
of two short forms that lack Val or Val-Arg at the N-terminus Nonetheless, in the digestion of hTNF-a
by ETNF-6-H, a strong signal of RTPSD (170 pmol for Arg) for the band at 17 kDa suggests that the bond between Ser5 and Arg6 was predominantly cleaved by ETNF-6-H as the first step The band
at 15 kDa, which appeared after 8 h of incubation, gradually became faint with increased incubation time Thus, the generated fragment is an intermediate prod-uct in the degradation of TNF-a The strong signal of the band at 13.3 kDa, LANGV (29.9 pmol for Leu), is considered to result from a fragment generated from the polypeptide cleaved at Ser5-Arg6
ETNF-6-H could cleave several peptide bonds, such
as Ser-Arg, Arg-Ser, Gln-Ala, Leu-Leu, and Asn-Gly Many catalytic antibodies, such as those against VIP
Table 1 Results of N-terminal amino acid sequence analysis for fragmented polypeptides from human TNF-a.
Fragmented band
Size (kDa)
Name of fragment (expected mass
in kDa)
Detected amino acids
of N-terminus
Band 3 (only TNF-a) 17.0 A (17.3) V (18.4), R (6.7), S (12.3), S (8.4), S (8.3) N-terminus
B (17.2) R (3.5), S (3.1), S (12.3), S (8.4), R (4.0) V1-R2
C (17.0) S (2.4), R (6.7), T (1.7), P (1.3), S (8.3) S4-S5 Band 4
(TNF-a + ETNF-6-H)
17.0 D (16.8) R (170), T (40), P (56), S (17), D (83) S5-R6
E (17.1) S (8.4), S (7.5), S (6.3), R (19.7), T (4.6) R2-S3 Band 5
(TNF-a + ETNF-6-H)
15.0 F (15.1) A (3.9), E (3.3), G (2.3), Q (2.7), L (2.8) Q21-A22
G (14.9) R (0.6), T (0.9), R (0.9), S (0.5), D (0.5) S5-R6 (C-terminus:
YLLFAESGQVYFGIIAL may be digested)
Band 6
(TNF-a + ETNF-6-H)
13.3 H (13.5) L (22.9), A (22.1), N (14.3), G (12.0), V (10.7) L36-L37
I (13.3) G (2.5), V (2.9), E (2.1), L (3.7), R (0.5) N39-G40
Trang 7[28], factor VIII [4], gp120 [32], and H pylori urease
[24], have been shown to possess a multicleavage site,
at which several peptide bonds were hydrolyzed in the
protein It is thought that a similar phenomenon was
observed in this case
The cleaved peptide bonds in the structure of
hTNF-a are shown in Fig 7 Several research groups
have determined the three-dimensional structure of
hTNF-a by X-ray diffraction analysis However, in
many cases, the conformation of four or five amino
acids at the N-terminus of hTNF-a could not be
deter-mined The amino acids in the crystal are presumably
flexible Thus, in the structure in Fig 6, Ser5 of
hTNF-a starts as an N-terminal amino acid
The peptide bonds cleaved by ETNF-6-H are
indi-cated by arrows in Fig 6 The structure of hTNF-a is
trimeric in its natural form The cleaved Gln21-Ala22
and Asn40-Gly41 bonds are in the loops and are
situ-ated on the surface of the hTNF-a protein The Leu36-Leu37 exists on the b-sheet and is also on the surface Specifically, it seems that all cleaved peptide bonds are on the surface of the hTNF-a protein, enabling easy access to catalytic antibodies The acces-sibility of the TNF-a molecule to ETNF-6-H to is one
of the most important factors in cleaving the molecule
A summary of the assumed process of cleavage by ETNF-6-H is shown in Fig 8 TNF-a was mainly degraded to fragment D, which was finally cleaved to fragment I The main route is a successive reaction It seems that many cleavage sites are present in the suc-cessive steps On the other hand, there must be other minor routes generating some minute fragments, such
as fragment G or fragment E The latter fragment may
be converted to fragment D and undergo a similar cleavage process as that in the main route Conclu-sively, the multicleavage sites may be generated by a successive degradation reaction and⁄ or simultaneously occurring cleavage reactions It is considered that the catalytic antibody heavy chain first accesses the flexible region (N-terminus) and then the loop structure (Gln21-Ala22 or Asn40-Gly41)
TNF-a is a cytokine that plays an important role, causing diseases such as COPD and Crohn’s disease Recently, a mAb, e.g infliximab, against TNF-a has been used for the treatment of such diseases [15–20] The difference between the antibody drug and the cat-alytic antibody is considered as follows The antibody drug (150 kDa), such as infliximab, firmly binds to TNF-a and blocks its function, resulting in a lowering
of the activity of the molecule Two molecules of
17 kDa
15 kDa
Fig 7 Site of cleavage by ETNF-6-H The cleaved peptide bonds
are indicated by arrows Cleavage at Gln21-Ala22 gave a band at
15 kDa in SDS ⁄ PAGE Cleavages at Leu36-Leu37 and Asn40-Gly41
gave a band at 13 kDa The cleaved Gln21-Ala22 and Asn40-Gly41
bonds are in loops and are situated on the surface of hTNF-a The
Leu36-Leu37 bond is on a b-sheet and is also on the surface It
seems that all cleaved peptide bonds are on the surface of hTNF-a,
which the catalytic antibody heavy chain seems to be able to
access easily to reach the cleavage sites.
1 VRSSSRTPSD KPVAHVVANP QAEGQLQWLN RRANALLANG VELRDNQLVV
51 PSEGLYLIYS QVLFKGQGCP STHVLLTHTI SRIAVSYQTK VNLLSAIKSP
101 CQRETPEGAE AKPWYEPIYL GGVFQLEKGD RLSAEINRPD YLLFAESGQV
151 YFGIIAL
Fig 6 Peptide bonds of hTNF-a cleaved by
ETNF-6-H The identified cleaved peptide
bonds are indicated by red arrows in the
sequence of hTNF-a.
Fig 8 An assumed cleavage scheme of hTNFa by ETNF-6-H.
A main-route for the cleavage was illustrated with bold thick arrows A sub-route was with dotted arrows.
Trang 8TNF-a may be blocked by one antibody drug
molecule On the other hand, one catalytic antibody
molecule (heavy chain in this case; 50 kDa) degraded
one TNF-a molecule for 1.5 h, based on a rough
esti-mation from Fig 5 Taking into account the quantity
of infliximab administered ( 30 mg per person per
one shot), about 0.4 lmol of TNF-a in the patient
should be blocked If a catalytic antibody is present in
a patient, about 0.2 mg of the catalytic antibody will
degrade the TNF-a molecules (0.4 lmol) for 1 week It
is expected that the quantity of the catalytic antibody
(heavy chain) administered can be decreased to 1⁄
100-fold as compared with the antibody drug, indicating
that the cost of the medicine and⁄ or adverse side
effects from the administration may be reduced
Con-sidering the above discussion, our finding of a catalytic
antibody cleaving TNF-a is interesting Although this
is basic research at the present time, it may provide a
new tool for medicinal application instead of the mAb
drug in the future
Experimental procedures
Antibody production
The ETNF-6 mAb used in this study was prepared by using
commercially available recombinant human TNF-a
(Strath-man Biotech AG, Hamburg, Ger(Strath-many)
subcu-taneously immunized with 50 lg per mouse of hTNF-a
equal volume of Freund’s complete adjuvant (Difco
Labo-ratories, Detroit, MI, USA) Further immunizations were
subcutaneously administered by the injection of 50 lg per
mouse of the emulsion in Freund’s incomplete adjuvant
(Difco Laboratories) at 2-week intervals after the first
immunization A final dose of 50 lg of human hTNF-a in
tail vein of each respondent mouse 3 or 4 days before
fusion The immunized spleen cells were removed from the
ratio of 5 : 1, using 50% poly(ethylene glycol) 1500
(Boeh-ringer Mannheim GmbH) The fused cells were placed into
the wells of 96-well culture plates (Becton Dickinson,
Franklin Lakes, NJ, USA) and cultivated in HAT medium
The fused cells were screened to find the antibody-secreting
cells by means of a modified sandwich ELISA Hybrids that
were found to secrete antibodies specific for the peptide
were cloned by the limiting dilution method The isotypes
of the resulting mAbs were determined with a mouse mAb
isotyping kit (IsoStrip; Roche 1493027, Indianapolis, IN,
USA) Ascites fluid was obtained by intraperitoneal
injec-tion of the hybridoma cell lines into pristane-primed female
Purification and separation of the antibody subunits
ETNF-6 mAb was purified according to the purification manual from the Bio-Rad Protein A MAPS-II kit (Nippon Bio-Rad, Tokyo, Japan) First, 5 mL of ascites fluid con-taining ETNF-6 mAb was mixed with the same volume of saturated ammonium sulfate solution The precipitate was recovered by centrifugation (9000 g, 10 min), and 5 mL of
was repeated twice, and was followed by two dialyses
con-taining ETNF-6 mAb was mixed with the same volume of the binding buffer of MAPS-II This mixture was then placed on a bed packed with Affi-Gel protein A for elution
of the bound mAb The eluted mAb was dialyzed twice against the buffer (50 mm Tris, 0.15 m NaCl, pH 8.0), at
by the use of a Centriprep YM-10 (Amicon, MA, USA) Five milligrams of antibody was dissolved in 2.7 mL of a buffer (pH 8.0) consisting of 50 mm Tris and 0.15 m NaCl, and reduced by the addition of 0.3 mL of 2 m
iodoacetamide was added, and the pH was then adjusted to
8 with 1 m Tris The solution was then incubated for 15 min
after which a half-volume of the sample was injected into an
6 m guanidine hydrochloride (pH 6.5) as an eluent Heavy chain fractions were collected, and this was followed by dilu-tion with 6 m guanidine hydrochloride The fracdilu-tions were
ELISA
gelatin for 1 h at room temperature After the plate had been washed, ETNF-6 mAb was immunoreacted, and this was followed by a reaction with anti-mouse Ig(G+A+M) conjugated with alkaline phosphatase After the substrate reaction with p-nitrophenyl phosphate, the absorption band
at 405 nm was measured by use of an immunoplate reader (InterMed NJ-2001, Tokyo, Japan)
Cleavage assay
Before the degradation reaction was conducted, most glass-ware, plasticware and buffer solutions were sterilized by
passing through a 0.2-lm sterilized filter Manipulations in
Trang 9the experiment were mostly performed in a safety cabinet,
to avoid airborne contamination
The degradation reaction of TP41-1 (60 lm) by
ETNF-6-H (0.4 lm) was conducted in a 15 mm phosphate buffer
the reacting solution was injected into the RP-HPLC
col-umn (Jasco) under isocratic conditions (0.05%
trifluoroace-tic acid and 12.5% acetonitrile), with a column temperature
For assay of the cleavage of TNF-a, ETNF-6-H (0.1 lm)
prepared as in the kinetics experiments was used along with
the initial concentration of hTNF-a (6.6 lm) under the
same reaction conditions as in the above experiments The
(running gel: 16%) with silver staining
Sequencing and molecular modeling
mRNA was isolated from the hybridoma secreting ETNF-6
mAb with an mRNA purification kit (Amersham
Pharma-cia Biotech UK, UK) The cDNAs of the light and heavy
chains were synthesized with a First-Strand cDNA
Synthe-sis Kit (Life Science, Branford, CT, USA) The variable
heavy and variable light fragments were amplified directly
by adding them to a mixture containing PCR components
and mouse Ig primers specific for IgG (Mouse Ig Primer
kit; Novagen, Darmstadt, Germany) The amplified DNA
ethidium bromide A band of approximately 450 bp was
observed, corresponding to the size of the variable fragment
of the antibody gene with little or no extraneous product
The PCR product was cloned into a pGEM-T Easy Vector
System (Promega, Madison, WI, USA) Sequencing was
conducted with an AutoRead Sequencing Kit (Amersham
Pharmacia Biotech) and an automated DNA sequencing
system (OpenGene System, Long-Read Tower; Amersham
Pharmacia Biotech)
Computational analyses of the antibody structures were
performed with the deduced variable light and variable
heavy amino acid sequences by a workstation (Silicon
Graphics, Sunnyvale, CA, USA) running abm software
(Oxford Molecular, Oxford, UK), which is used for
build-ing models of three-dimensional molecules The resultbuild-ing
Protein Data Bank data were applied to minimize the total
energy by using discover II software (Molecular
Fukuoka, Japan) was used to visualize, analyze and draw
the structures
N-terminal sequencing
At 24 h of incubation, the reaction solution was recovered
and concentrated up to 10-fold, with an ultrafiltration
mem-brane (Amicon Ultra-4 5000MWCO; Millipore Corpora-tion, Bedford, MA, USA) The samples were then subjected
were transferred for 1 h at 112 mA onto an
methanol at pH 8.7 After being stained with Coomassie Brilliant Blue, visible bands were cut and subjected to N-terminal sequence analyses (Automated Protein Sequen-cer, Prosize 494 HT; Applied Biosystems, Foster City, CA, USA), with the amount of protein used ranging from 2 to
40 pmol For 0.5–2 pmol of the fragment, an automatic protein microsequencer, Prosize 494 cLC (Applied Biosys-tems), was used
Acknowledgements This study was supported by the Japan Science and Technology Agency (Creation of Bio-devices and Bio-systems with Chemical and Biological Molecules for Medical Use) and Grants-in-Aid for Scientific Research from the Ministry of Education, Culture, Sports, Science and Technology of Japan We are also grateful to K Hatiuchi and E Terada for helping with some of the experiments
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