A single amino acid substitution of Leu130Ile in snake DNases Icontributes to the acquisition of thermal stability A clue to the molecular evolutionary mechanism from cold-blooded to war
Trang 1A single amino acid substitution of Leu130Ile in snake DNases I
contributes to the acquisition of thermal stability
A clue to the molecular evolutionary mechanism from cold-blooded
to warm-blooded vertebrates
Haruo Takeshita1,*, Toshihiro Yasuda2,*, Tamiko Nakajima1, Kouichi Mogi1, Yasushi Kaneko1,
Reiko Iida3and Koichiro Kishi1
1
Department of Legal Medicine, Gunma University School of Medicine, Maebashi, Japan;2Department of Biology and
3
Department of Legal Medicine, Fukui Medical University, Matsuoka, Japan
We purified pancreatic deoxyribonucleases I (DNases I)
from three snakes, Elaphe quadrivirgata, Elaphe
climaco-phoraand Agkistrodon blomhoffii, and cloned their cDNAs
Each mature snake DNase I protein comprised 262 amino
acids Wild-type snake DNases I with Leu130 were more
thermally unstable than wild-type mammalian and avian
DNases I with Ile130 After substitution of Leu130Ile, the
thermal stabilities of the snake enzymes were higher than
those of their wild-type counterparts and similar to
mam-malian wild-type enzyme levels Conversely, substituting
Ile130Leu of mammalian DNases I made them more
thermally unstable than their wild-type counterparts
Therefore, a single amino acid substitution, Leu130Ile,
might be involved in an evolutionally critical change in the
thermal stabilities of vertebrate DNases I Amphibian
DNases I have a Ser205 insertion in a Ca2+-binding site of mammalian and avian enzymes that reduces their thermal stabilities [Takeshita, H., Yasuda, T., Iida, R., Nakajima, T., Mori, S., Mogi, K., Kaneko, Y & Kishi, K (2001) Biochem
J 357, 473–480] Thus, it is plausible that the thermally stable wild-type DNases I of the higher vertebrates, such as mammals and birds, have been generated by a single Leu130Ile substitution of reptilian enzymes through molecular evolution following Ser205 deletion from amphibian enzymes This mechanism may reflect one of the evolutionary changes from cold-blooded to warm-blooded vertebrates
Keywords: cDNAcloning; deoxyribonuclease I; molecular evolution; snake; thermal stability
Deoxyribonuclease I (DNase I, EC 3.1.21.1) is an enzyme
that preferentially attacks, by Ca2+-and Mg2+-dependent
endonucleolytic cleavage, double-stranded DNAto
produce oligonucleotides with 5¢-phospho and 3¢-hydroxy
termini [1] It is considered to play a major role in
digestion in the alimentary canal, because, in mammals, it
is secreted by exocrine glands such as the pancreas and/or
parotid gland [2–7] However, DNase I also exists outside
the alimentary tract [8–11], raising a doubt as to whether
its major role in DNAmetabolism in vivo is merely
digestion Recently, DNase I was postulated to be responsible for the removal of DNAfrom nuclear antigens at sites of high cell turnover and thus for the prevention of systemic lupus erythematosus (SLE) [12] The gene product of human DNASE1*6 was more thermally unstable than that of the other alleles and subjects who were heterozygous for this allele had significantly low serum DNase I activity levels [13] These findings indicate that the thermal stabilities of DNase I
in vitro might reflect the enzyme activities in vivo We found that amphibian DNases I are characterized by a C-terminal end with a unique cysteine-rich stretch and by insertion of a Ser residue into the Ca2+-binding site, resulting in thermal instability compared with DNases I from mammals and birds [14] Fish DNase I also exhibited similar low thermal stability relative to amphi-bian DNases I (K Mogi, H Takeshita, T Yasuda,
T Nakajima, E Nakazato, Y Kaneko, M Itoi &
K Kishi, personal communication) In these contexts, it would be very interesting how the higher vertebrates, such
as mammals and birds, which are also classified as warm-blooded vertebrates, have acquired thermal stability of their DNase I molecules through the evolutionary steps from the lower, cold-blooded, vertebrates, such as amphi-bia and fish
We have already reported the purification and biochemi-cal characterization of mammalian [4,5,7,14–18], avian [19]
Correspondence to K Kishi, Department of Legal Medicine,
Gunma University School of, Medicine, Maebashi,
Gunma 371–8511, Japan Fax: + 81 27 220 8035,
E-mail: kkoichi@med.gunma-u.ac.jp
Abbreviations: aa, amino acid; Con A, Concanavalin A;
nt, nucleotide; SLE, systemic lupus erythematosus;
SRED, single radial enzyme diffusion.
Enzymes: DNase I, (EC 3.1.21.1).
Note: The nucleotide sequence data reported will appear in DDBJ,
EMBL and GenBank Nucleotide Sequence Databases under accession
nos AB046545, AB050701 and AB058784.
*Note: These authors contributed equally to this research and listed
in alphabetical order.
(Received 23 September 2002, revised 18 November 2002,
accepted 25 November 2002)
Trang 2and amphibian [14] DNases I As the primary structures of
amphibian DNases I differ considerably from those of
other vertebrate DNases I, comprehensive characterization,
including determination of thermal stabilities, of reptilian
DNases I is required, not only to elucidate the molecular
evolutional aspect of the DNase I family but also to address
the queries about how the higher vertebrate DNases I
acquired their thermal stabilities described above In this
study, we purified DNases I from the pancreases of three
snake species, Elaphe quadrivirgata (Shima-hebi in
Japan-ese) and Elaphe climacophora (Aodaisho) of the Colubridae
OPPEL and Agkistrodon blomhoffii (Nihon-mamushi) of
the Viperidae Laurenti, which are widely distributed in
Japan, and cloned the cDNAof each Asingle amino acid
(aa) substitution was confirmed to affect the thermal
stabilities of vertebrate DNases I and, furthermore, one of
the postulated mechanisms whereby thermal stability is
acquired by a DNase I family at the evolutional step from
cold-blooded vertebrates, such as snakes, to warm-blooded
ones, such as mammals, is discussed
Materials and methods
Materials and biological samples
Three different species of snake, E quadrivirgata,
E climacophora and A blomhoffii weighing about 210 g
(110 cm long), 270 g (130 cm long) and 120 g (70 cm long),
respectively, were obtained from the Japan Snake Institute,
Gunma, Japan Phenyl Sepharose CL-4B, DEAE
Seph-arose CL-6B and Superdex 75 were purchased from
Amersham Pharmacia Biotech; Concanavalin A (Con
A)-agarose was from Seikagaku Kogyo (Tokyo, Japan); rabbit
muscle G-actin and salmon testis DNAwere from Sigma;
Superscript II reverse transcriptase (RT), all the
oligonu-cleotide primers used, and the RACE systems were from
Life Technologies; the Expanded High Fidelity PCR system
was from Roche Diagnostics All the other chemicals used
were of reagent grade and available commercially The
snakes and Japanese white rabbits were acquired,
main-tained and used in accordance with the Guidelines for the
Care and Use of Laboratory Animals (NIH, USA; revised
1985)
Analytical methods
DNase I activity was assayed by the previously described
test tube [15] or single radial enzyme diffusion (SRED) [2]
methods, except that 50 mM Tris/HCl buffer, pH 7.5,
containing 10 mM MgCl2 and 1 mM CaCl2 was
substi-tuted for the reaction buffer Protein concentrations were
measured using a protein assay kit (Bio-Rad) with BSAas
the standard The enzymological properties of the snake
enzymes and the inhibitory effects of specific antibodies
on their activities were examined as described previously
[4,15,20] Samples of 15 different tissues were obtained
from each snake as soon as possible after it had been
killed by exsanguination under general anesthesia with
diethyl ether Preparation of the samples for the assays
and determination of enzyme activity were performed as
described previously [7,21–22] The N-terminal aa
se-quences of the purified enzymes were determined by
Edman degradation [4] The presence of DNase I-specific mRNAwas verified by RT-PCR amplification of the total RNAextracted from each snake tissue using sets of primers corresponding to the N- and C-terminal aa sequences of the respective enzymes [23]
Purification of DNases I from snake pancreases All the procedures described below were carried out at 0–4C Pancreas samples, weighing approximately 3.4, 1.2, and 0.7 g, were obtained from five individuals each of the species E quadrivirgata, E climacophora and A blomhoffii, respectively The samples were minced separately and homogenized in 5–10 mL 25 mMTris/HCl buffer, pH 7.5 (buffer I), containing 1 M ammonium sulfate and 1 mM phenylmethane sulfonyl fluoride After centrifugation (10 000 g, 20 min), the supernatant (crude extract) was applied to a first phenyl Sepharose CL-4B column (1.6· 15 cm) pre-equilibrated with the same buffer and the adsorbed materials were eluted with a 300-mL linear reverse ammonium sulfate concentration gradient (1.0–0M)
in buffer I The active fractions eluted with about 500 mM ammonium sulfate were collected and solid ammonium sulfate was added to give a concentration of 1.0M This was then applied to a second phenyl Sepharose CL-4B column (1· 10 cm) pre-equilibrated with the same buffer The DNase I was eluted with 100 mL of the same gradient The active fractions were collected, dialyzed against buffer I, applied to a DEAE Sepharose CL-6B column (1· 15 cm) pre-equilibrated with buffer I and the adsorbed materials were eluted with a 100-mL linear NaCl concentration gradient (0–1.0M) in buffer I The active fractions eluted over the NaCl concentration range of 250–300 mM were concentrated using polyethylene glycol 6,000, then subjec-ted to gel filtration using the A¨KTA FPLC system (Amersham Pharmacia Biotech) equipped with a Superdex
75 column (1.6· 60 cm) with buffer I containing 150 mM NaCl as the eluent The active fractions were collected and then applied to a Con A-agarose column (1· 2 cm) pre-equilibrated with buffer I containing 150 mM NaCl The column was washed well with the same buffer and then DNase I was eluted with 300 mM methyl-a-D -mannopyr-anoside in the same buffer The active fractions were collected and used as the purified enzymes for the subsequent experiments Aspecific rabbit antibody against purified DNase I from E quadrivirgata was prepared as described previously [15]
Construction of the cDNA species encoding
E quadrivirgata, E climacophora and A blomhoffii DNases I
Total RNAwas isolated from each snake pancreas by the acid guanidinium thiocyanate/phenol/chloroform method [24] and any DNAcontamination was removed by treat-ment with RNase-free DNase I (Stratagene) The 3¢-end region of cDNAs of all the snakes were obtained by 3¢-RACE method using two degenerate primers based on aa sequences that are highly conserved in vertebrate DNase I, the Tyr97–Cys104 and Met166–Cys173 sequences of human DNase I [25] Next, the 5¢-end regions of the cDNAs were amplified by the 5¢-RACE method using
Trang 3gene-specific primers based on the nucleotide (nt) sequences
determined in this study These RACE procedures were
carried out using the 3¢- and 5¢-RACE systems described
above, according to the manufacturer’s instructions The
RACE products were subcloned into the pCR II TA
cloning vector (Invitrogen, San Diego, CA, USA) and
sequenced The nt sequences were determined by the
dideoxy chain-termination method using a Dye Terminator
Cycle sequencing kit (Applied Biosystems, Urayasu, Japan)
The sequencing run was performed on a Genetic Analyzer
(model 310, Applied Biosystems) and all the DNA
sequences were confirmed by reading both strands
Construction of expression vectors and transient
expression of the constructs in COS-7 cells
ADNAfragment containing the entire coding sequence
of E quadrivirgata DNase I cDNAwas prepared from
the total RNAderived from the pancreas by RT-PCR
amplification using an Expanded High Fidelity PCR
system with a set of two primers, 5¢-GAATTCGAGGCC
ATGAAGACCATCTTG-3¢ (sense) and 5¢-CTCGAGG
GGCTCAGGTGGATTTTAGG-3¢ (antisense),
corres-ponding to the nt sequences of the cDNAfrom positions
28–48 and 867–885, respectively The amplified fragment
was ligated into the pcDNA3.1 (+) vector (Invitrogen) to
construct the expression vector Six other expression
vectors with cDNAinserts encoding E climacophora,
A blomhoffii, Xenopus laevis, human, rat and mouse
DNases I, were prepared in the same manner Two
substitution mutants for surveying the G-actin binding site
at aa position 67, E quadrivirgata (Ile67Val) and
A blomhoffii (Val67Ile), in which an Ile or Val residue
was substituted with Val or Ile, respectively, at aa position
67 in E quadrivirgata and A blomhoffii DNases I, respectively, were constructed using the splicing by overlap extension method [26] with the corresponding wild-type construct as a template Ten mutants for surveying the
aa sites responsible for thermal stability at positions 130 and 166, E quadrivirgata (Leu130Ile), A blomhoffii (Leu130Ile), human (Ile130Leu), rat (Ile130Leu), mouse (Ile130Leu), E quadrivirgata (Leu166Met), A blomhoffii (Leu166Met), human (Met166Leu), rat (Met166Leu) and mouse (Met166Leu), and four double substitution mutants, E quadrivirgata (Leu130Ile/Leu166Met), rat (Ile130Leu/Met166Leu), mouse (Ile130Leu/Met166Leu) and human (Ile130Leu/Met166Leu), were prepared in the same manner All the constructs had their sequences confirmed and were purified for transfection using the Plasmid Midi kit (Qiagen) Transient expression of the constructs in COS-7 cells followed by analysis of the enzyme was performed as described previously [27] All transfections were performed in triplicate with at least two different plasmid preparations
Phylogenetic analysis The nt sequences of the DNase I cDNAof human [28], mouse [17], rat [29], rabbit [5], pig [16], fish (Oreochromis mossambicus) [30], cow [18], chicken [19], two frogs, toad and newt [14] with the following respective database accession numbers EMBL M55983, EMBL U00478, EMBL X56060, EMBL D82875, EMBL AB048832, EMBL AJ001305, EMBL AJ001538, EMBL AB013751, EMBL AB030958, EMBL AB038776, EMBL AB045037 and EMBL AB041732 were obtained Phylogenetic trees with the nt sequence of the open reading frame (ORF) of their cDNAs and the corresponding aa sequences, in
Table 1 Summary of the purification of DNases I from the pancreases of three species of snake The results of the sequential enzyme purification procedure, using pancreases obtained from five individuals of each species as starting material, are summarized.
Species and purification step Protein (mg) Total activity (U) Specific activity (UÆmg)1) Purification (fold) Yield (%)
E quadrivirgata
A blomhoffii
E climacophora
Trang 4which the region of the putative signal peptide was not
included, aligned by the neighbor-joining algorithm using
theCLUSTALW program were constructed [31,32]
Results and discussion
Purification and characterization of snake pancreatic
DNases I
The purification results for each snake pancreatic DNase I
are summarized in Table 1 This procedure, using four
different types of column chromatography, allowed all
three snake DNases I to be easily and reproducibly
isolated and purified to electrophoretic homogeneity
(Fig 1, A1), representing 1400- to 2100-fold purification
Tandem phenyl Sepharose chromatographies without loss
of total enzyme activity were a particularly effective step
for purifying each snake enzyme Both gel filtration and SDS/PAGE analysis showed that E quadrivirgata DNase I had a molecular mass of 35 kDa Its pH optimum of 7.5 was higher than those of mammalian enzymes [4,5,7,15–17] and lower than those of amphibia (pH 8.0) [14] Edman degradation of the purified E quad-rivirgata and A blomhoffii enzymes revealed the same N-terminal aa sequences over the first 10 cycles: Leu1-Arg-Ile-Gly-Ala-Phe-Asn-Ile-Arg-Ala10
Although G-actin is known to be a potent inhibitor of human [15], cow [33] and mouse [17] DNases I, the activities of rat [4], porcine [16], chicken [19] and amphibian [14] DNases I were unaffected by G-actin G-actin (3.2 nM) abolished the enzyme activity of human DNase I (0.3 units) and reduced that of A blomhoffii wild-type DNase I to 50% of its initial level, but did not affect the activities of E quadrivirgata or E climacophora wild-type DNases I It has been suggested that two aa residues (Tyr65 and Val67) are mainly responsible for actin binding in human and bovine DNases I [34,35] The latter residue (Ile67) in both E quadrivirgata and
E climacophora DNase I was substituted In comparison with the susceptibility of each wild-type enzyme to G-actin, the susceptibility of the E quadrivirgata (Ile67-Val) enzyme was increased to the level of the wild-type
A blomhoffiienzyme, whereas the A blomhoffii (Val67Ile) enzyme and E quadrivirgata wild-type enzymes were equally susceptible These findings show that the presence
of Val67 is one of the essential factors responsible for the actin-binding capacity of these snake DNases I
Tissue distribution of snake DNases I The DNase I activities in the 15 different tissues from each snake were determined The activity detected in the pancreas of each snake was over three orders of magni-tude greater than that in the small intestine However, other tissues listed in Fig 1 exhibited no DNase I activity under our assay conditions These enzyme activities were abolished by 20 mM EDTA, 5 mM EGTAand the appropriate specific anti-DNase I Ig, which confirmed they were due to DNase I The presence of DNase I-specific mRNAwas verified by RT-PCR analysis of the total RNAextracted from each snake tissue (Fig 1B) Specific PCR products were amplified only from the pancreatic and small intestinal total RNAs of the three snakes No amplified products were obtained from the RNAs of the other tissues The restriction of DNase I gene expression to only two tissues, the pancreas and small intestine, in snakes and amphibia [14] contrasts with the situation in mammals and birds, in which more widespread expression has been observed in various tissues, including the kidney, liver and stomach, as well
as the pancreas and small intestine [2,7,19]
cDNA structures encoding three snake DNases I and expression of the DNase I cDNAs in COS-7 cells The total RNAs isolated from the pancreases of the three snake species were amplified separately by the 3¢- and 5¢-RACE methods to construct cDNAs encoding DNases I The use of two primers based on aa sequences
Fig 1 Electrophoretic patterns of snake purified DNases I and
recombinant enzymes (A), and RT-PCR analysis of the total RNA from
several tissues of E quadrivirgata (B) (A1) Purified DNase I (about
1 lg) from human urine (lane 1), E quadrivirgata pancreas (lane 2),
E climacophora pancreas (lane 3) and A blomhoffii pancreas (lane 4)
were subjected to SDS/PAGE using a 12.5% gel [20], followed by silver
staining (A2) Recombinant E quadrivirgata, E climacophora and
A blomhoffii DNases I expressed in COS-7 cells were subjected to
activity staining for DNase I using a DNA-cast PAGE method [21,22]:
aliquots containing about 0.2 units of activity of the purified (lanes 1, 3
and 5) and recombinant (lanes 2, 4 and 6) enzymes were used Lanes 1
and 2, E quadrivirgata enzyme; lanes 3 and 4, E climacophora
enzyme; lanes 5 and 6, A blomhoffii enzyme The cathode is at the top.
(B) The total RNAisolated from several tissues, including the pancreas
(lane 2), small intestine (lane 3), liver (lane 4), kidney (lane 5), large
intestine (lane 6), stomach (lane 7) and parotid gland (lane 8) of
E quadrivirgata was reverse-transcribed and PCR-amplified with a set
of specific primers Aunique 850-bp fragment corresponding to the
region encoding E quadrivirgata DNase I was amplified from only the
pancreas and small intestine: the cerebrum, heart, lung, spleen, skin,
muscle, esophagus and Harder’s gland gave no amplified fragment.
Also, RT-PCR analysis of the corresponding set of tissues from
E climacophora and A blomhoffii exhibited the same results as
E quadrivirgata (data not shown) Lane 1 contains a DNAmarker
derived from /X174 DNAdigested with HaeIII.
Trang 5that are highly conserved in vertebrate DNases I allowed
successful amplification of specific RACE products from
the total RNAof each species The full-length cDNA
encoding E quadrivirgata DNase I (accession number
AB046545) comprised 1071 bp, including an ORF of
849 bp coding for 283 aas, a 33-bp 5¢-untranslated region
(UTR) and a 189-bp 3¢-UTR The sequence flanking the
first ATG (positions 34 –36) was in accordance with the
Kozak consensus for a translation start site [36] We also
cloned and sequenced the cDNAspecies encoding the
DNases I of A blomhoffii (accession number AB050701)
and E climacophora (accession number AB058784) and
found full-length sequences of 1050 and 1071 bp,
respect-ively The entire nt sequences of both the ORF and
5¢-UTR regions of E climacophora DNase I cDNAwere
identical to those of E quadrivirgata, but 8.4% (16/189) of
the entire nt sequence in the 3¢-UTR of the former was
different from that of the latter The N-terminal aa
sequences determined chemically from the purified
enzymes exactly matched those deduced from the cDNA
data of E quadrivirgata and A blomhoffii, indicating that
each putative upstream signal sequence containing the first
Met residue was 20 aa residues long About 12% (33/283)
of the aa residues in the entire sequence of A blomhoffii
deduced from its cDNAdata differ from those of
E quadrivirgataand E climacophora
Each expression vector containing the entire coding
region of E quadrivirgata, E climacophora or A blomhoffii
DNase I cDNAwas transiently transfected into COS-7
cells The snake enzyme activities expressed in the COS-7
cells were abolished by the appropriate specific antibodies
and, furthermore, they migrated to positions corresponding
to the purified pancreatic enzymes on the DNA-cast PAGE
gel (Fig 1A2), confirming that the isolated cDNAs did
indeed encode the expected snake DNases I Comparison of
the predicted primary structure (Fig 2) with human, chicken and frog sequences allowed us to demonstrate several common structural features unique to the snake enzymes The four residues responsible for the catalytic activity of the other vertebrate DNases I, Glu78, His134, Asp212 and His252 [5,14–19,25,28,33], were conserved in all the snake enzymes Cys173 and Cys209, which form the disulfide bond responsible for the stability of the enzyme [37], and also Arg41 and Tyr76, that mediate DNase I– DNAcontact in the other vertebrate DNases I and orientate the scissile phosphate relative to the enzyme [38], were also found in all the snake enzymes The unique cysteine-rich-terminus and inserted Ser in the Ca2+-binding site of amphibian DNases I [14], were not observed in the snake enzymes As in mammalian, but not amphibian DNases I [14–19,25,28,33], two potential N-linked glycosy-lation sites, Asn18 (Asn-Gln-Thr) and Asn106 (Asn-Gly/ Thr-Thr), were well present in the snake enzymes, which also showed high affinity for Con A–lectin These findings indicate that, with respect to their structural relationships, snake DNases I are far from amphibian enzymes, but close
to mammalian and avian DNases I
Thermal stabilities of wild-type and substitution mutant snake DNases I
The thermal stabilities of the wild-type and mutant enzymes of the snakes were examined by measuring the activities remaining after incubation for 40 min at various temperatures (Fig 3) Wild-type snake and amphibian DNases I are more thermally unstable than those of higher vertebrates, such as the human, rabbit, rat, mouse and chicken [4,5,15,17,19] When the primary structures of the three snake enzymes were compared with those of other vertebrates, only two aa residues, Leu130 and Leu166, of
Fig 2 Alignment of the amino acid sequences of snake DNases I with those of human, chicken and X laevis DNases I The aa sequences of the snake DNases I were deduced from their respective cDNAs and compared with those published for human, chicken and X laevis DNases I Position 1 aa was assigned by comparison with the N-terminal aa sequences determined chemically from the purified enzymes The aa sequences of
E climacophora DNase I are not shown because they were identical to those of the E quadrivirgata enzyme Alignment of the sequences was performed using the Genedoc program (available at http://www.psc.edu/biomed/genedoc/).
Trang 6the former were observed in all the lower vertebrates
studied, i.e four amphibia [14] and one fish [37], which are
all classified as cold-blooded vertebrates These two
residues were replaced by Ile130 and Met166, respectively,
in warm-blooded vertebrates, i.e the human [28], cow [18],
pig [16], rabbit [5], rat [4], mouse [17] and chicken [19]
These findings furnished us with a clue to a mechanism
whereby DNases I have evolved, i.e Leu130Ile and/or
Leu166Met might convert the thermally unstable DNases I
of cold-blooded vertebrates to the thermally stable ones of
warm-blooded vertebrates Therefore, we constructed a
series of substitution mutant enzymes (Fig 3) In brief,
E quadrivirgata, A blomhoffii and X laevis wild-type
DNases I were all less thermally stable than human, rat and mouse wild-type enzymes The mutant enzymes
E quadrivirgata (Leu130Ile), E quadrivirgata (Leu130Ile/ Leu166Met) and A blomhoffii (Leu130Ile) were all more thermally stable than the corresponding wild-type DNases I, whereas E quadrivirgata (Leu166Met) and
A blomhoffii (Leu166Met) were as thermally unstable as their wild-type counterparts These results suggest that Leu130Ile conferred increased thermal stabilities to the snake enzymes, but Leu166Met did not Conversely, the human (Ile130Leu) and human (Ile130Leu/ Met166Leu) mutants were more thermally unstable than their wild-type counterparts, whereas human (Met166Leu) was not The same was true for these mutants of the rat and mouse DNase I (Fig 3) These findings demonstrate that the nature of the amino acid at position 130 may generally and markedly affect the thermal stabilities of vertebrate DNases I The 3D structure of DNase I based on X-ray structure analysis of the bovine enzyme has demonstrated that the central core of DNase I is formed by two tightly packed six-stranded b-sheets and that the extended hydrophobic core is mainly responsible for the structural stability and rigidity of DNase I [37,39] The aa residue at position 130 is located in the central core, whereas that at position 166 is not Accordingly, it could be predicted that
a substitution of the former residue might induce some alterations in the structural stability of DNase I, whereas that of the latter would not These predictions were found
to be compatible with the experimental results described above Therefore, these facts suggest that the aa residue at position 130 may be responsible for the thermal stability of DNase I
We have reported another mechanism of generating a thermally stable enzyme form from a thermally unstable one: frog, toad and newt DNases I all have a Ser205 insertion in a domain that contains an essential Ca2+ -binding site in the mammalian enzymes and are thermally
Fig 3 Comparison of the thermal stabilities of wild-type and mutant DNases I derived from snakes (A), human (B) and other vertebrates (C) Each wild-type and mutant DNase I sample (1.0 unit) was incubated
in 50 m M Tris/HCl buffer, pH 7.5, for 40 min at various temperatures,
as indicated in the figure, using a Dry Thermo Unit DTU-2B (TAI-TEC, Saitama, Japan), and then its residual activity was measured by the SRED method (2) The temperature of thermal denaturation (T 1/2 )
is defined as that at which the DNase I activity is halved and shown in the figure The value for each enzyme represents triplicate determina-tions and the assay precision was estimated to be within 10% (A)
E quadrivirgata wild-type (s), E quadrivirgata (Leu130Ile) (d),
E quadrivirgata (Leu130Ile/Leu166Met) (j) and E quadrivirgata (Leu166Met) (h) DNases I The thermal stabilities of A blomhoffii wild-type, A blomhoffii (Leu130Ile) and A blomhoffii (Leu166Met) enzymes were similar to those of the corresponding E quadrivirgata enzymes (B) Human wild-type (s), human (Ile130Leu) (d), human (Ile130Leu/Met166Leu) (j) and human (Met166Leu) (h) DNases I (C) Rat wild-type (s), rat (Met166Leu) (h), rat (Ile130Leu) (d), rat (Ile130Leu/Met166Leu) (j) and X laevis wild-type (m) DNases I The thermal stabilities of the mouse wild-type, mouse (Ile130Leu), mouse (Ile130Leu/Met166Leu) and mouse (Met166Leu) enzymes were very similar to those of the corresponding rat enzymes.
Trang 7unstable [14] Insertion of a corresponding Ser residue
between Ala204 and Thr205 of human and rat DNases I
reduced their thermal stabilities to levels similar to those of
amphibian enzymes These findings led us to conclude that
there are at least two mechanisms that might be involved in
changing the thermally stable characteristics of vertebrate
DNases I, substitution of Ile130Leu in snakes and insertion
of Ser205 in amphibia It is interesting that DNases I of
warm-blooded vertebrates, such as humans, pigs, rabbits,
rats and chicken, are all thermally stable, while those of
cold-blooded vertebrates, such as snakes, frogs, toads and
newts, are all thermally unstable It could be postulated that
the thermally stable DNases I of the higher vertebrates must
have been produced principally by the Leu130Ile
substitu-tion first in avian enzymes at the evolusubstitu-tionary stage from
reptiles to birds after deletion of Ser205 from the enzymes of
amphibians as they evolved into reptiles Thermal stability
of the enzyme might be evaluated as one of the factors that
reflect the DNase I activity levels in vivo [13] A s a lack of, or
decrease in, DNase I activity has been suggested to be a
critical factor in the initiation of human and rat SLE [12,40],
the acquisition of thermally stable characteristics during
DNase I evolution may provide a clue to the etiology of
SLE in humans and mice, which are classified as
warm-blooded vertebrates
Phylogenetic analyses of interspecies variations
in the DNase I family
Based on both the aa and nt sequences of 14 vertebrate
DNases I, the phylogenetic trees for the DNase I family
were constructed (Fig 4) The bootstrap values calculated
in the tree based on the aa sequence were lower than those in
the latter tree, and an alignment of nt sequences was found
to be more adequate for molecular evolutionary analysis of
the DNase I family The mammalian group formed a
relatively tight cluster, while the snake (E quadrivirgata,
E climacophoraand A blomhoffii), amphibian (X laevis,
Rana catesbeiana, Bufo vulgaris japonicus and Cynops
pyrrhogaster), avian (chicken) and fish (O mossambicus)
DNases I were individually situated at independent
posi-tions far from the mammalian DNase I cluster The snake
enzymes are placed closer to the avian than the amphibian
forms With regard to the evolutionary origin of birds,
conflicting results of phylogenetic analysis supporting a bird–mammal or bird–reptile relationship have been repor-ted [41,42] However, our data based on the nt sequences of DNase I molecules may provide evidence of a bird–reptile rather than bird–mammal relationship
Acknowledgements
We thank Dr Atsushi Sakai, The Japan Snake Institute, Gunma, Japan, for providing us three kinds of snake We thank Mrs Masako Itoi and Miss Emiko Nakazato for their excellent technical assistance This work was supported in part by Grants-in-Aid from Japan Society for the Promotion of Science (12770216 to H T.,
12307011, 14657111 to K K and 12357003 to T Y.) and grants from the Japan Science Society 2001 to K M (JSS-12-153), Uehara Memorial Foundation 2002 to H T and Daiwa Securities Health Foundation to K K.
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